Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2211 ATGGGTGGTGTTGCTTGGACAGAAGAAGAAGATTACCTGCTCAAGAAATGCATACAGCAATACGGAGAAGGAAAGTGGCATCGCATTCCTCTATTGGCTGGTCTAAACAGGTGCCGAAAGAGTTGCAGGTTAAGATGGCTGAATTATCTTCGTCCAAACATCAAGAGAGGAAATTTTACTGATGAAGAAGTTGAAATGATTGTCAAACTCCACAAATTATTAGGCAACAGGTGGTCACTGATTGCTGGAAGGCTACCAGGAAGGACTGCTAATGATGTGAAAAACTATTGGAACTGTCATCTGAGTAAAAAACTAAATGCTCAAGAAGCTGAAGATCACAGAGAACTAACAAAAGATGTTCAAGTCATTAGACCCCAGCCTAGAAACATAGGTTCAAGCTCAATGAAGAGGATGAGCCAGAGTGAGTCTCCAACTGACCAAGGAGTTCAACAAGAGAATATTGGCGTGACATTTGATGCTGGAGGGCAGAGTCATAATCCTGAATCACAACAAGAGAGCATGTATCCAGGCTTGAACCAACAGGGCATGGTTGGTTGTGAGTTTCCAATGGACTTTCAATTAGAAGGATTTGAAACAATGGCAAGTGGAGAGGGTAGTAGCAGCCAGTGGAATTGGGATGATTTGTTCTTGGACATGGATCTTTATAACGAATTTTCTTCTTAG 684 0.4196 MGGVAWTEEEDYLLKKCIQQYGEGKWHRIPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFTDEEVEMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNAQEAEDHRELTKDVQVIRPQPRNIGSSSMKRMSQSESPTDQGVQQENIGVTFDAGGQSHNPESQQESMYPGLNQQGMVGCEFPMDFQLEGFETMASGEGSSSQWNWDDLFLDMDLYNEFSS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2211 227 Gene3D - 57 124 - -
Lja1g2211 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Lja1g2211 227 MobiDBLite consensus disorder prediction 157 176 - -
Lja1g2211 227 PANTHER MYB TRANSCRIPTION FACTOR 5 224 - -
Lja1g2211 227 Gene3D - 4 55 - -
Lja1g2211 227 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Lja1g2211 227 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Lja1g2211 227 MobiDBLite consensus disorder prediction 127 149 - -
Lja1g2211 227 CDD SANT 58 101 IPR001005 -
Lja1g2211 227 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Lja1g2211 227 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Lja1g2211 227 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 224 - -
Lja1g2211 227 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Lja1g2211 227 SMART sant 55 103 IPR001005 -
Lja1g2211 227 SMART sant 2 52 IPR001005 -
Lja1g2211 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Lja1g2211 227 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2211 Lja-Chr1 25693014 25694813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2211 5 131 MYB Transcription Factor Family AT1G66370 59.854 3.37e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g2211 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2211 K09422 - gmx:100798101 351.288