Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2200 ATGGCACAAGTCGAGCATAACGTGTCATCATCCCAGCAGACACCAATAACCTCATCCCATGCTGACAATAACAGAGATGGTGAACAACCTGTAGGGACAGCTATCCAGAATGTGGAAGAAGCTCCTCCTTCTTCTAGCGACAATGCCACTCAACTCCAAAATCCCAACCAACAGGGAAGGAAACGATATATGCGTCACACTCAGCACCAAATAAAAGAGATGGAAAACTTCTTCAAGGAGTACCCTTACCCAGATGATGAGCAAAGGAGAGAGCTTAGCGATTTGATCGGGCTGAACTCCTCACAAGCTATGTTGGAACGTCATACTAATGATATTTCGACTGCTGAGATTGAGAAGCTTCGCGCTGAGATTCTTATGTACAAGGAGGCATTGAATAATGCTAAGTGTGCTAGTTGTGGAGGCCAAACTTATGTTCGTGAAGTGTCCTATGAAAATCAGCAATTAAGGCTCGAGAATGCTCGACTAAAAGAAGAGGCACATACCACAACTTTTATCTCTCAACAAATATTTTCTTTGTTTCTTCCTCTTTGTTGA 555 0.4306 MAQVEHNVSSSQQTPITSSHADNNRDGEQPVGTAIQNVEEAPPSSSDNATQLQNPNQQGRKRYMRHTQHQIKEMENFFKEYPYPDDEQRRELSDLIGLNSSQAMLERHTNDISTAEIEKLRAEILMYKEALNNAKCASCGGQTYVREVSYENQQLRLENARLKEEAHTTTFISQQIFSLFLPLC* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2200 184 ProSiteProfiles 'Homeobox' domain profile. 57 102 IPR001356 GO:0003677
Lja1g2200 184 SUPERFAMILY Homeodomain-like 42 102 IPR009057 -
Lja1g2200 184 CDD homeodomain 60 102 IPR001356 GO:0003677
Lja1g2200 184 MobiDBLite consensus disorder prediction 38 61 - -
Lja1g2200 184 MobiDBLite consensus disorder prediction 1 65 - -
Lja1g2200 184 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC1 44 168 - -
Lja1g2200 184 Coils Coil 98 137 - -
Lja1g2200 184 SMART HOX_1 59 112 IPR001356 GO:0003677
Lja1g2200 184 Gene3D - 35 105 - -
Lja1g2200 184 MobiDBLite consensus disorder prediction 1 31 - -
Lja1g2200 184 Pfam Homeodomain 60 102 IPR001356 GO:0003677
Lja1g2200 184 Coils Coil 145 165 - -
Lja1g2200 184 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 44 168 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2200 Lja-Chr1 25510533 25512001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2200 51 183 Homeobox Transcription Factor Family AT4G04890 45.098 4.83e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lja1g2200 Homeodomain 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2200 K09338 - egr:104439742 132.109