Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2199 ATGGCAGAAACAATTGCTAAAAATCCTACATCGACTTCCTTCTCTAACATGCCACCACTACCAACTCACACTCTAGTTCCTTCGAACTCTCTTGATGTTGTTAACTATGTTCCGCAACCATGCATGTCAGTGCAAGTTCATGGTGGTAGATGGGACACTCAAAGGTCAATTATCAACACTCCTTTTACAGAACTTGAGAAAACCTGCATGGTGAAGCTTGCGGTTGGAGCAATGGAGGAATTTACCAAGATGGTTCACAATGTAGCACCTTTATGGATCCCTGGATTTGATACTGAGATTCTAAATCAACAAGAATACTTTAAGGCTTTCTCTCTAGGACTAGGTCCAAAACCCTTGGGGTTTAGATCTAAAGCTTCAAGGGAAACTACAGTTGTTATCATGAACCCAAGTAACCTCATTGAAATACTAATGGATGTGAACCAATGGTCAACTATGTTTCCCAATATTGTTTCAAGTGCAACGACAACAGAAATCTTATCAATTGGAGTGCCAGGAAGCTATGATGGAGCCTTGAAAGTGATCTCAGCAAAGTTTCAAGTGTTGGCACATCTTGTTCCAACCCGTGATAACTATTTCTTAAGGTACTGTAAGTATCACCCTGATGGGGCATGGGCGGTTGTTGATATTTCCTTGGACTATGTGAGACCTGATGCTGCCTCCAAATGTAGAAGACGAGCCTCTGGTTGTATGATTCAAGAATTAACAAATGGTTTCTCAAAGGTTACATGGATTGAACATGTAGAAGTTAAAGACAAAGTGGTGCATGATCTCTTTAAACATCTAGTTACTTCTGGCTTTGCCTTTGGAGCTAAACGGTGGATAGCAACTTTAGATAGACAATGTGAACGTCTTGCTTGCACAATGGCATCAAACATTCCACCAGAGGACCTTAGTGGGATAACTCCTGAAGGAAGAAAAAGCTTGATGAAGTTGGCCGAGAAAATTATGCAGAGCTATTGCTATTATGTTGGTTCTTCCCCACAACCACCACATGTTTGGACAGTCCAAACAATACCACCTAATGGGGTTGATGATGTGAGGATCATGACCAGAAACCATACTGACGCATCAGGCGCAATAATCGGTCTTGTTATCAATGCTGCAATATGTTTCTCGCTTTCAGTTCCTTCCAAGAGTCTCTTTGATTTTCTTCAAAATGTAAACTCAAGAAACCAGTGGGATATTCTCACTGACGGCTTTCTAGTTCAAGAAATGGCACACATAGCAACCGGTCGTGATCCTGGTAACTTTGTATCTTTACTTCATGCCAATAGTTCAAATGGCAATGAAAACAACAAGGCCATAATTCAAGAGGCTTGCACTGACTCTACAGGCTCATATGTGGTTTATGCTCCAATTGAAACTAGTATCATGAATTTAGTCATGAGTGGCTCCAATCTAGATTATGGTACCCTGCAGCCCTCGGGCTTTGCCATTCTTCCTGATGGGCCTGGATTGAGTGGAGGGCCCATAACAGATGTTGGATCTGGGCGTTGTTTAGGAACATTTGCTTATCAGGTATTGGTTAAAGAAACACTAGCACCACTACCTCCTGGTATAGTGTCCTCTTTGTACAAATCGACGAAGGGCACAATTGAAAAAATCCAAGCTGCAATGATGCGCGAGAGAACCTGA 1656 0.4191 MAETIAKNPTSTSFSNMPPLPTHTLVPSNSLDVVNYVPQPCMSVQVHGGRWDTQRSIINTPFTELEKTCMVKLAVGAMEEFTKMVHNVAPLWIPGFDTEILNQQEYFKAFSLGLGPKPLGFRSKASRETTVVIMNPSNLIEILMDVNQWSTMFPNIVSSATTTEILSIGVPGSYDGALKVISAKFQVLAHLVPTRDNYFLRYCKYHPDGAWAVVDISLDYVRPDAASKCRRRASGCMIQELTNGFSKVTWIEHVEVKDKVVHDLFKHLVTSGFAFGAKRWIATLDRQCERLACTMASNIPPEDLSGITPEGRKSLMKLAEKIMQSYCYYVGSSPQPPHVWTVQTIPPNGVDDVRIMTRNHTDASGAIIGLVINAAICFSLSVPSKSLFDFLQNVNSRNQWDILTDGFLVQEMAHIATGRDPGNFVSLLHANSSNGNENNKAIIQEACTDSTGSYVVYAPIETSIMNLVMSGSNLDYGTLQPSGFAILPDGPGLSGGPITDVGSGRCLGTFAYQVLVKETLAPLPPGIVSSLYKSTKGTIEKIQAAMMRERT* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2199 551 CDD START_ArGLABRA2_like 70 289 - -
Lja1g2199 551 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 27 548 IPR042160 -
Lja1g2199 551 ProSiteProfiles START domain profile. 63 293 IPR002913 GO:0008289
Lja1g2199 551 SUPERFAMILY Bet v1-like 64 291 - -
Lja1g2199 551 Gene3D - 116 288 IPR023393 -
Lja1g2199 551 Pfam START domain 75 290 IPR002913 GO:0008289
Lja1g2199 551 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-LIKE 27 548 - -
Lja1g2199 551 SMART START_1 72 290 IPR002913 GO:0008289
Lja1g2199 551 SUPERFAMILY Bet v1-like 308 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2199 Lja-Chr1 25507929 25510497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2199 63 546 Homeobox Transcription Factor Family AT4G21750 55.010 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2199 K09338 - tcc:18597106 570.466