Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2189 ATGGCTGAGGGTTTTGAGCACTATCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTTCTTGAACCTTCACCTATCCTTCACCCTTTACCTTCTTCTCTCTACGACCCTTCACTTATTTCCTCTGATTTGTTAGCTTGTGTCAACAACAACCAACAAGGTCATCATGATGTGTTTCATGGTGGTAAAGCAACAAACCAAGGTGGTGGCGGTTCTGTGAAAGAAGAACGTTCCAATTTGATGATGGGGTTTGTGAATAGTGGCGCCGGTGGTTCTTCCTCTTCTTCTTCTCCTCCTGCTTCTGTTTCCCACCACGGTTACTTGGATCCTTTTCTTTACCCTCCTCAGAACCTCCAGAGCTTTCGAGAATTTGATTACAATGATGGAAGTGGAATAATGGTGTTCAAGCCTGAGCCTTTGTCTCTGTCTTTGTCATCCCACAACAAAAACACTCATCACCACGCGCTGGAGCTGAATCTTGATCAGCGATATGGGGCTATTTATGGAGACAAGGTTGGTGGTGGTGGCGGTGGTGGTGTGGTTCCGGTGGTTGTTGGAGGAGGAAGTGGTGGTTGTGCCTCGAATGAAGTTTCGAGGAACTCTACGGTTGTTCCTGTGAGACCATTTACGGGGTATTCATCGGTGTTGAAGGGATCGAGGTTCTTGAGGCCTGCACAGCAATTATTGGAAGATCTGTGTGATATTGGGGTTCGTGGAGTTTACAGTGAGAAAATTACTGCGGATGCGTCGTTGATGGAAACTCCTGCGGAGAGTTTGAGTGCTAGTGGGATTGTTGTGGATGATTCACTTGGGGATGTGAATGAAGGTAGGAAGAACAAGTCCAGGTTATTAACCATGCTTGATGAGGTATATAGGAGGTACAAGCTGTACTATCAACAGATGCATGCAGTTGTGACTTCATTTGAGTATGTTGCCGGCCTCGGTAATGCAGCCCCCTATGCTAGTTTGGCCGTAAATGCCATGTCTAAACATTTTAGATGCTTGAAGAATGCGATCACTGACCGGCTTCAGTTTATCAACAAGACTCATTTTCAGATGAGCAATAGGAAGGATGAATCTCCAAGGTTTCGTGGCAGTGATAGAGGAGGCCCTTACGGCCAAAGGTCGACAGGGTTTCTAGAGCATCAACAACCTGTTTGGCGACCTCAAAGAGGTCTCCCTGAGCGTGCCGTGAGTGTCCTGAGGGCATGGTTGTTTGAACATTTTCTGCACCCTTATCCTACTGATACGGACAAACTAATGTTGTCTAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATACACATGCTTGAATCACAACAATCTCAAAAGACATCACAGAGGGAAGAACATAGTAGGAACAATCTGAGTGATCATCTTTTACCTTCAGATAACATCACCGAGAATCCATCTACCTCAACACATAAATTTCGAACTAGAGATGAACTTCCTAACATGCCGGTGAGGAGTCAGGAACAACTGAACCAGCAAACTAACACAAGCAACATTCAGCAAGTGGGTATTGGAGGGAGCATGGGGAGTACTGGTGCAGGCAACAATGGTGTGTCTCTGACGCTTGGTCTTCATCAAAATCACGGGATTGGGTTATCTGAGCCCTTTAGAATGAGTCAGCGTTTCGGTCTTGCCCTTCAACCGGAGGCAGTGTATGTTACAAGTGGTTTTGAATCACACAATCGACATTTCGGAAGAGATGTTATTGGAGGGCAACTGTTGCATGACTTTGTGGGCTGA 1809 0.4555 MAEGFEHYHVPQQSRRDKLRVLEPSPILHPLPSSLYDPSLISSDLLACVNNNQQGHHDVFHGGKATNQGGGGSVKEERSNLMMGFVNSGAGGSSSSSSPPASVSHHGYLDPFLYPPQNLQSFREFDYNDGSGIMVFKPEPLSLSLSSHNKNTHHHALELNLDQRYGAIYGDKVGGGGGGGVVPVVVGGGSGGCASNEVSRNSTVVPVRPFTGYSSVLKGSRFLRPAQQLLEDLCDIGVRGVYSEKITADASLMETPAESLSASGIVVDDSLGDVNEGRKNKSRLLTMLDEVYRRYKLYYQQMHAVVTSFEYVAGLGNAAPYASLAVNAMSKHFRCLKNAITDRLQFINKTHFQMSNRKDESPRFRGSDRGGPYGQRSTGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLSKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLESQQSQKTSQREEHSRNNLSDHLLPSDNITENPSTSTHKFRTRDELPNMPVRSQEQLNQQTNTSNIQQVGIGGSMGSTGAGNNGVSLTLGLHQNHGIGLSEPFRMSQRFGLALQPEAVYVTSGFESHNRHFGRDVIGGQLLHDFVG* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2189 602 Pfam Associated with HOX 216 341 IPR006563 -
Lja1g2189 602 SMART prehox3 211 342 IPR006563 -
Lja1g2189 602 MobiDBLite consensus disorder prediction 357 377 - -
Lja1g2189 602 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 21 568 - -
Lja1g2189 602 Gene3D - 391 453 - -
Lja1g2189 602 SUPERFAMILY Homeodomain-like 390 455 IPR009057 -
Lja1g2189 602 SMART HOX_1 388 452 IPR001356 GO:0003677
Lja1g2189 602 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 21 568 - -
Lja1g2189 602 ProSiteProfiles 'Homeobox' domain profile. 385 448 IPR001356 GO:0003677
Lja1g2189 602 MobiDBLite consensus disorder prediction 457 504 - -
Lja1g2189 602 MobiDBLite consensus disorder prediction 477 492 - -
Lja1g2189 602 Pfam Homeobox KN domain 405 444 IPR008422 GO:0003677|GO:0006355
Lja1g2189 602 CDD homeodomain 388 449 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2189 Lja-Chr1 25379501 25384231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2189 133 602 Homeobox Transcription Factor Family AT5G02030 48.134 1.00e-116 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja1g2189 POX 3.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2189 - - gmx:100790713 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2189 1 25379501 25384231 Lja1g2189 1 25379501 25384231 ECH