Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2180 ATGGACCAACACAAGATTACTACTACATTGTCAATATTTATAACAACCGCAGCACTGTTGCTAACATGCGCCGTGGCGGTGCAGCACTGTGGGAACTGCGGTCCAAACCCGGTTCCGTATCCATTAAGCACAGGACCCGACTGTGGTGACCCGTTGTACAAGATTCGATCCATAGACTCGGTAAACCGTCGGATCATAATCCAACCGGCTACACTTTTAGGAAAAGTGTGCATGTCCACGGATTTCCGCAGTGAAGGCATACACCTGAACGAGACTCTTATGTTTAGCGTGGCTGCGGGCAACACCGTGTTTATGTTGAATTGTTCCTTTAACGCGCCACACGCGCCGCCGCCGGCTATGGACTGCTCCGCGAGCAGCTTGTGCCACAGCTATATCAGGGATCATAAGGATGCTAGCGCGTGCGGGAGCGTGGGTTTTTGTTGCACGTACAAGATTGGTGAGGCCCGCAAGGAGTATGGGGTTGCGGTTGGGGTTCACAGCAATGGGTGCGCAGCGTATCAGAGTTTCGTGGATTTGGATGGCGCGGTGGCAATGCCGGGAAAAGGGTGGCCGGAGGCAGGAGTGGCGATAGAGTGGGTGGCTCCGCTGGAACCGATTTGCAAGGGGCCAATGGATTGCAATGCATTGTTGAACTCAAAGTGTGTGGTGAGCCCTAGGGGTGGTGGGGTGCATAGGTGCTTATGCAATGCTGGCTTTAAGTGGGAACCTAGCAATGGAATTTGCCAACCTCAAGCTCAATCTCAACTCCAAAATATACGGTGCACAGGACATGAGAAAGGCAGCCACTGCAAAGTTAGGAAGAAAAAGAAAAAGAAAATAATGCTTCTGGCTGTGGCTGTTTCCTTGGGTGGAGTAGTCTCTATAGCAACAGCAATTGGAGTCATTTTCTACAAAAAGCACAACCAAGGGGAGAGTAAAACAAAGAAGACCATAATCAAAAAGGCTAAAGAAATCTCAAATGCTAAAGCTAGTGCTTTATCATCCAGAATCTTCACGGGCAGAGAGATTAGAAAAGCAACCAACAATTTCTCTGAAGAAAAGCTTATCGGCTCTGGCGGTTTCGGTGAAGTGTTCAAGGGAACTTTTGAAGATGGTACTGTAATAGCAATCAAGCGTGCCAAGCTTGGAAGCACCAAAGGTGTAGATCAAATACAGAACGAGGTTCGAATCCTCTGCCAAGTTAACCACAGAAGCCTAGTGAGACTCCTTGGTTGTTGCTTGGAGTTTGAGCACCCTCTTCTAATTTATGAGTATGTTTCCAATGGGTCACTTTTTGATTACCTTCATCGCCACCCTTCAGCCAAAACAACACCACTCAAATGGCATCAAAGACTCAAAATTGCACACCAAACAGCTGAAGGGCTATCCTATCTGCATTCTGCAGCTGTGCCTCCAATTTACCATCGTGATGTGAAATCAAGCAATATATTGCTTGATGCTAAGCTTGATGCCAAGGTCTCAGACTTTGGATTATCTAGGCTTGTGGAAATTTCTGAGCAAAACAAGAGCCATATCTTCACTAGTGCTCAAGGAACACTCGGTTATCTTGACCCTGAATACTACATGAACTTCCAATTGACAGATAAGAGTGATGTATACAGCTTTGGGGTGGTGTTGATGGAGCTGCTCACGGCACAGAAAGCCATTGATTTCAACAGGGAGGAAGAGAATGTGAACTTGGCAGTGTATGCAAGGAAGATGATGATTGAAGATGGGTTGATTGAACTTGTTGATCCTTTTCTTAAAGAGGAAGCTGGGGAAATTGAATTGGAAACTATGAAGTCATTGGGTTCTCTTGCAGCTGCTTGCTTGAATGAGCAGAGACAGAAACGGCCTTCCATGAAAGAAGTTTCAGATGAGATTGAGTACCTAATTAAGATTTTTAAAGGCCAGGTTTCCAAACGATGA 1929 0.464 MDQHKITTTLSIFITTAALLLTCAVAVQHCGNCGPNPVPYPLSTGPDCGDPLYKIRSIDSVNRRIIIQPATLLGKVCMSTDFRSEGIHLNETLMFSVAAGNTVFMLNCSFNAPHAPPPAMDCSASSLCHSYIRDHKDASACGSVGFCCTYKIGEARKEYGVAVGVHSNGCAAYQSFVDLDGAVAMPGKGWPEAGVAIEWVAPLEPICKGPMDCNALLNSKCVVSPRGGGVHRCLCNAGFKWEPSNGICQPQAQSQLQNIRCTGHEKGSHCKVRKKKKKKIMLLAVAVSLGGVVSIATAIGVIFYKKHNQGESKTKKTIIKKAKEISNAKASALSSRIFTGREIRKATNNFSEEKLIGSGGFGEVFKGTFEDGTVIAIKRAKLGSTKGVDQIQNEVRILCQVNHRSLVRLLGCCLEFEHPLLIYEYVSNGSLFDYLHRHPSAKTTPLKWHQRLKIAHQTAEGLSYLHSAAVPPIYHRDVKSSNILLDAKLDAKVSDFGLSRLVEISEQNKSHIFTSAQGTLGYLDPEYYMNFQLTDKSDVYSFGVVLMELLTAQKAIDFNREEENVNLAVYARKMMIEDGLIELVDPFLKEEAGEIELETMKSLGSLAAACLNEQRQKRPSMKEVSDEIEYLIKIFKGQVSKR* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2180 642 ProSiteProfiles Protein kinase domain profile. 350 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2180 642 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Lja1g2180 642 SMART serkin_6 350 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2180 642 CDD STKc_IRAK 356 629 - -
Lja1g2180 642 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 20 19 637 - -
Lja1g2180 642 SUPERFAMILY Protein kinase-like (PK-like) 328 626 IPR011009 -
Lja1g2180 642 Gene3D Transferase(Phosphotransferase) domain 1 426 639 - -
Lja1g2180 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Lja1g2180 642 Gene3D Phosphorylase Kinase; domain 1 308 425 - -
Lja1g2180 642 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 637 IPR045274 GO:0007166
Lja1g2180 642 Pfam Protein kinase domain 351 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2180 Lja-Chr1 25301866 25307340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2180 29 641 Receptor kinase-like Gene Family AT5G02070 53.052 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lja1g2180 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2180 - - aprc:113862410 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2180 1 25301866 25307340 Lja1g2180 1 25301866 25307340 ECH