Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2178 ATGATGGAGGAAATAATGGCCAATTGGTCTCCAATATTAGATGATGATGGGTCTCCTTTTCTCATGCAGCCAGAGCCAAACAACACCATAATTAGAGCAGTTTCAAGAGACCAAGCCTTTAATTATAGGTTCATCTCCAACATTTACTCAGGCCCTACCATCTCAGACATTGAAAATGCTTTATCTGTGACCACCAACAAAACAGAGCACTTTTCAGCATCAGCCAGAGTTTCCATTTTGGAAAGGAATTTGAGCAAGATTGAGAACAAGTACACCCTGAAAATCAAATGCTTCGGCAATGGGATGGGTGATGATGGATATAAGTGGCGGAAGTATGGACAGAAATCTATTAAGAATAGCCCAAATCCTAGGAGTTACTATAGATGCACCAATCCAAGGTGCAGTGCGAAGAAGCAGGTTGAAAGATCCAATGAGGACCCTGAGACTCTTATCATCACATATGAAGGGCTCCACCTCCACTTTGCATACCCATGCTTCCTGGTGGGCCAACCACAGCAATCCCAGTCCCACCCACCAGTCAAGAAGTCCAAGTTTACCTCTTCACAAGTCCAAGCCCAGGCCCAAGCCCAGGACTTCATAGTCAACGAAGCCCAAGCCAGTGCTTCTGTGGGCCTGACATCACCCACGCTGCTGAACTCTCCACAAGACATGGCCCAACAAAATTTGGGCTCACAAGGGTTGCTTGAAGACATGGTGCCATTCATGGTGAGAAACCCCTCCAACAACCTCAACAGTGGTTACTCGAAACTTTCATGTTCCGCAGACCCTTCTCCAACATCACCTCCTCTGTGGACTTCTGGTCATTCCACCTCCTTTCATACCGTTGGCTTGAATTCAACCACTTAG 867 0.4648 MMEEIMANWSPILDDDGSPFLMQPEPNNTIIRAVSRDQAFNYRFISNIYSGPTISDIENALSVTTNKTEHFSASARVSILERNLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPETLIITYEGLHLHFAYPCFLVGQPQQSQSHPPVKKSKFTSSQVQAQAQAQDFIVNEAQASASVGLTSPTLLNSPQDMAQQNLGSQGLLEDMVPFMVRNPSNNLNSGYSKLSCSADPSPTSPPLWTSGHSTSFHTVGLNSTT* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2178 288 SUPERFAMILY WRKY DNA-binding domain 101 160 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g2178 288 MobiDBLite consensus disorder prediction 257 288 - -
Lja1g2178 288 ProSiteProfiles WRKY domain profile. 98 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2178 288 Gene3D WRKY domain 99 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g2178 288 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 258 IPR044810 GO:0003700
Lja1g2178 288 PANTHER WRKY TRANSCRIPTION FACTOR 49-RELATED 12 258 - -
Lja1g2178 288 Pfam WRKY DNA -binding domain 104 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2178 288 SMART WRKY_cls 103 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2178 Lja-Chr1 25290544 25292759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2178 43 245 WRKY Transcription Factor Family AT5G43290 46.725 1.69e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g2178 WRKY 3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2178 - - lja:Lj1g3v3443950.1 542.347