Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2176 ATGGAGTTCAATGCCCAAAATTCTAGTAAATCTCAGCAAATAGGGTGGAGATCAGATGATTTGGGTGGTCCTGGACAAGTTAGGTCTTATTCTTGTACCTTTTGCAAGAGAGGGTTCTCAAATGCACAAGCACTAGGTGGCCACATGAATATCCATAGAAGGGATAGAGCCAAGCTCAAGCAATCTTCCGAAGAAAACTTGCTTTCTTTGGACATTTCAATGAAGAGCACAGAGCACCTTGATTCAGAAGAGAACCTAGCACCTCAAAAAGGCAAGCTGGTAAGTGCAACAACAGCAGAACATCCTCGTAATCCTTCATATGTTGCCAAAGCAACTGGTAGTAGTGTTGTTGTACAGATGAGCAGTGAAGAGGAGAAAACAGATTTAGACCTTGAGCTCAGGTTAGGCTTTGAACCGCTTGGGTCATCAATATTGAGCACCAGAGCGTTCTTTTGA 456 0.432 MEFNAQNSSKSQQIGWRSDDLGGPGQVRSYSCTFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENLLSLDISMKSTEHLDSEENLAPQKGKLVSATTAEHPRNPSYVAKATGSSVVVQMSSEEEKTDLDLELRLGFEPLGSSILSTRAFF* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2176 151 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Lja1g2176 151 PANTHER TRANSCRIPTIONAL REGULATOR TAC1 2 142 - -
Lja1g2176 151 SUPERFAMILY beta-beta-alpha zinc fingers 28 56 IPR036236 -
Lja1g2176 151 MobiDBLite consensus disorder prediction 1 16 - -
Lja1g2176 151 Gene3D Classic Zinc Finger 22 91 - -
Lja1g2176 151 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Lja1g2176 151 PANTHER OS07G0101800 PROTEIN 2 142 - -
Lja1g2176 151 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2176 Lja-Chr1 25271554 25272824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2176 26 139 C2H2 Transcription Factor Family AT3G53820 39.370 7.44e-19 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g2176 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2176 - - lja:Lj1g3v3443990.1 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2176 1 25271554 25272824 Lja1g2176 1 25271554 25272824 ECH