Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2164 ATGGGTGCTTGCTGGAGCAATAAGATAAAGGCTGTGAGTCCTTCCAATACAGGTTTCACTTCTAGAAGTGTCAGCAGGAGTGGCAATGACACCAGCACAGATAGCAGGAACTCGTCAGCCTCCATATCGGTCACTTCTCGAAGCGAGGGTGAGATCTTGCAGTCTTCCAATTTGAAAAGCTTCACCTACAATGAGCTAAGAGCAGCCACGAGAAATTTCCGCCCAGATAGCGTATTAGGGGAGGGGGGATTTGGTTCAGTTTTTAAGGGCTGGATAGATGAGCATTCGCTTACTGCTACCAAACCAGGAATGGGCAGTATTGTTGCTGTCAAGAGGCTTAACCAAGAAGGATTCCAGGGTCACAGAGAATGGTTGGCTGAAATCAACTATCTTGGGCAACTTCAGCATCCTAATCTTGTCAAGTTAATAGGGTACTGCTTTGAGGACGAACATCGGCTTCTGGTTTATGAATTTATGCCTAAGGGTAGCATGGAGAATCATCTGTTCAGAAGAGGTTCTTATTTTCAGCCATTCTCTTGGAGTTTGCGATTGAAAATAGCCCTTGGGGCTGCAAAGGGTCTTGCTTTTCTCCATAGTACAGAACCTAAAGTCATATACCGTGACTTCAAAACTTCAAATATCCTACTTGACACCAAATATAGTGCCAAACTTTCTGATTTTGGGTTGGCCAGGGATGGGCCAGTTGGTGATAAAAGCCATGTCTCAACTAGGGTCATGGGAACCCGTGGATATGCAGCACCGGAGTATCTAGCAACAGGTCATCTTACTGCCAACAGTGACGTATATAGTTTTGGGGTAGTTCTTCTGGAGATCATATCAGGAAGACGAGCTATAGACAAGAACCAACCAGCTGGAGAGCATAACCTGGTTGAATGGGCCAAGCCTTACCTATCCAACAAACGGAGAGTTTTCCGGGTGATGGATCCGCGTCTGGAAGGACAATATTCCCATAGCCGAGCTCAAGCCGTGGCAGCCCTTGCTATGCGGTGTCTTGATGTAGAGCCTAAGTGCAGGCCAGGCATGGATGAGGTTGTGAAAGCATTGGAGCAGCTTCAGGAACCAAAGGACACACAGAAAAAAGGTGCTGATCCGAAAGGGGACCGCGTTCGAGGTTCCGGCCTCAACCACCAGGCTTCTGGCAAAGGAGGTGCAGATGCTACTAGAAAGGCCACTGCTTATCCCAGACCTTCTGCTTCTTTCCTTCATGCTTGA 1233 0.4761 MGACWSNKIKAVSPSNTGFTSRSVSRSGNDTSTDSRNSSASISVTSRSEGEILQSSNLKSFTYNELRAATRNFRPDSVLGEGGFGSVFKGWIDEHSLTATKPGMGSIVAVKRLNQEGFQGHREWLAEINYLGQLQHPNLVKLIGYCFEDEHRLLVYEFMPKGSMENHLFRRGSYFQPFSWSLRLKIALGAAKGLAFLHSTEPKVIYRDFKTSNILLDTKYSAKLSDFGLARDGPVGDKSHVSTRVMGTRGYAAPEYLATGHLTANSDVYSFGVVLLEIISGRRAIDKNQPAGEHNLVEWAKPYLSNKRRVFRVMDPRLEGQYSHSRAQAVAALAMRCLDVEPKCRPGMDEVVKALEQLQEPKDTQKKGADPKGDRVRGSGLNHQASGKGGADATRKATAYPRPSASFLHA* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2164 410 MobiDBLite consensus disorder prediction 356 410 - -
Lja1g2164 410 PANTHER OS01G0588500 PROTEIN-RELATED 22 395 - -
Lja1g2164 410 MobiDBLite consensus disorder prediction 356 377 - -
Lja1g2164 410 PANTHER KINASE 1B 22 395 - -
Lja1g2164 410 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
Lja1g2164 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Lja1g2164 410 Pfam Protein kinase domain 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2164 410 SUPERFAMILY Protein kinase-like (PK-like) 40 355 IPR011009 -
Lja1g2164 410 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2164 410 MobiDBLite consensus disorder prediction 13 46 - -
Lja1g2164 410 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Lja1g2164 410 Gene3D Transferase(Phosphotransferase) domain 1 159 378 - -
Lja1g2164 410 CDD STKc_IRAK 79 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2164 Lja-Chr1 25167357 25170977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2164 26 355 Glycoside Hydrolase AT3G07070 47.432 3.12e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja1g2164 Pkinase 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2164 - - gmx:100819620 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2164 1 25167357 25170977 Lja1g2164 1 25167357 25170977 ECH