Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2161 ATGAGCTTCACTTCGATTCCCGCCACTTCGCTGCAACCACAGGATATGGCTGGGGTGAAATCAGAGGAGTGTTGTTTGGAGAATAAGCAAACTACTGTCGCTTCTTGCTCCTCTGTATCTGAAGGCAGTGGCAGTGCACTTCGCAAATCTCCAGGGATATGTAGCCCGGCGTCGACATCAACCTCACATCGGAGGACCACTGGCCCTATAAGACGTGCTAAAGGTGGTTGGACTGCAGAGGAGGATGAGACATTAAGGAATGCTGTTGCAGCTTTTAAAGGAAAGAGTTGGAAGAAGATAGCTGAGTTTTTTCCTGATAGATCAGAAGTTCAGTGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAGCTTGTTAAAGGACCATGGACACAGGAGGAAGACGATAAAATTATTGATCTGGTGTCAAAATATGGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTGCCTGGTCGAATAGGGAAACAGTGTCGAGAGCGGTGGCACAATCATCTTAACCCCGACATAAAGAAGGATGCCTGGACTTTGGAGGAGGAATTGGCCCTGATGAATGCTCATCAGATATGGGGGAATAAATGGGCTGACATAGCTAGGTTTCTTCCTGGAAGGACTGATAATGCAATAAAAAACCACTGGAATAGTTCTTTGAAGAAAAAGTTGGATTTTTATTTAACTACTGGAAGACTTCCACCAATTCCAAAGAACAGCTCGCAAGTTGCTGCCAAAGATGCAATTAGACATTCTGCTACTAAAACATTGCACATGCAAGAACAGTTTGCAAGTTGCTCAAATAAAGAATTAAATGCAGCTGTTGAAACATCGTCTGAAACTACAGCCATTAGTAAGATAGATGACAGTAGCAAGTATCAGTTTGAGTCCTCAGGAACAATTAGAGAAGTTGGTGATTCTTCAAGTGTTCCTGCAAATGAACCTGCTGATTCTGACGGTATAGAATGCAAGCCTGGACCATCCAACATGGATCATAGCTATAGCCACTCAGAACAAGTACCAACTGCTAATTTTGGAATTACACATGAGCAGAAGTTTGAGAATTCTGGACTAAATGGAAACTCAACAAGTGAGCATTGTTTAAACAATGGCAAGATGAGCAGTAGCAGGTTAATCAGGACACCTTCTTCAAAAGAAAGTCTAACCTATGGTTCTCTATGTTATGAGCCACCCCAATTAGATGGTTCGGTTCCTTTAGATTCTCTTTATTTAAATATTGTTTGCCAGCAGAATGAGTATTGTTCCAATCCAATGTTGTCATCACCTATTGGTTTCTTCACTCCACCTCGGGTGAAGGCTAGTGAATTATGCACAGAGACACCTGAATCAATATTGAAAAAAGCTGCTAATACTTTTCCAAATACTCCTTCCATATTGAGGAGAAGAACTAGAGTCCAAACGCACACTACTCCAAGTAAAGTTTTGAAAGTAGACAGTGATTCACATACTTCTAATGAACCCGATAAAACCAAGAATAATTCTGGTTCGGAAGTTGAGACGTTCTCTGAGAGTCCAGAAAGCCATGGCAATGGGAGCAACATTCCCAATAATAAGGCATTCAATGCATCTCCGCCATATCGGTTAAGATCGAAGAGAACAGCAGTTGTGAAGTCTGTTGAGAAACAACTTGAGTTTGTGTTTGACAAAGAGATGAATGATGAGAATATGAATACAATGGAAAAGCCTGTGAAGAGGAGCAATGTGAGGACTGAAGATTGTCTGCATGAAACAAAATTGCTAGTAACATAA 1779 0.4143 MSFTSIPATSLQPQDMAGVKSEECCLENKQTTVASCSSVSEGSGSALRKSPGICSPASTSTSHRRTTGPIRRAKGGWTAEEDETLRNAVAAFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIIDLVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHQIWGNKWADIARFLPGRTDNAIKNHWNSSLKKKLDFYLTTGRLPPIPKNSSQVAAKDAIRHSATKTLHMQEQFASCSNKELNAAVETSSETTAISKIDDSSKYQFESSGTIREVGDSSSVPANEPADSDGIECKPGPSNMDHSYSHSEQVPTANFGITHEQKFENSGLNGNSTSEHCLNNGKMSSSRLIRTPSSKESLTYGSLCYEPPQLDGSVPLDSLYLNIVCQQNEYCSNPMLSSPIGFFTPPRVKASELCTETPESILKKAANTFPNTPSILRRRTRVQTHTTPSKVLKVDSDSHTSNEPDKTKNNSGSEVETFSESPESHGNGSNIPNNKAFNASPPYRLRSKRTAVVKSVEKQLEFVFDKEMNDENMNTMEKPVKRSNVRTEDCLHETKLLVT* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2161 592 MobiDBLite consensus disorder prediction 298 317 - -
Lja1g2161 592 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 227 IPR017930 -
Lja1g2161 592 MobiDBLite consensus disorder prediction 38 70 - -
Lja1g2161 592 PANTHER MYB PROTEIN-RELATED 33 500 - -
Lja1g2161 592 Pfam Myb-like DNA-binding domain 74 120 IPR001005 -
Lja1g2161 592 ProSiteProfiles Myb-like domain profile. 173 223 IPR001005 -
Lja1g2161 592 MobiDBLite consensus disorder prediction 298 341 - -
Lja1g2161 592 PANTHER MYB-RELATED PROTEIN B-LIKE 33 500 - -
Lja1g2161 592 Gene3D - 73 125 - -
Lja1g2161 592 MobiDBLite consensus disorder prediction 458 488 - -
Lja1g2161 592 SMART sant 125 174 IPR001005 -
Lja1g2161 592 SMART sant 177 225 IPR001005 -
Lja1g2161 592 SMART sant 73 122 IPR001005 -
Lja1g2161 592 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 120 IPR017930 -
Lja1g2161 592 SUPERFAMILY Homeodomain-like 75 130 IPR009057 -
Lja1g2161 592 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 176 IPR017930 -
Lja1g2161 592 CDD SANT 77 120 IPR001005 -
Lja1g2161 592 ProSiteProfiles Myb-like domain profile. 121 172 IPR001005 -
Lja1g2161 592 ProSiteProfiles Myb-like domain profile. 69 120 IPR001005 -
Lja1g2161 592 SUPERFAMILY Homeodomain-like 123 219 IPR009057 -
Lja1g2161 592 MobiDBLite consensus disorder prediction 52 66 - -
Lja1g2161 592 Gene3D - 126 177 - -
Lja1g2161 592 Gene3D - 179 258 - -
Lja1g2161 592 CDD SANT 128 172 IPR001005 -
Lja1g2161 592 CDD SANT 180 223 IPR001005 -
Lja1g2161 592 MobiDBLite consensus disorder prediction 498 530 - -
Lja1g2161 592 Pfam Myb-like DNA-binding domain 129 187 - -
Lja1g2161 592 MobiDBLite consensus disorder prediction 458 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2161 Lja-Chr1 25111217 25118036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2161 3 571 MYB Transcription Factor Family AT3G09370 46.564 3.61e-150 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g2161 Myb_DNA-bind_6 3.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2161 K09422 - gmx:778081 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2161 1 25111217 25118036 Lja1g2161 1 25111217 25118036 ECH