Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2160 ATGGCTTCTTCAACTCTGAGCTCCTCATCATCCATCATCACTCCTCGCACCCCTAACAAACTCTCCAACAACCCCATTTCAATTTCCAATGTCAGGGTCATCGTCAGAGTCAGAGTCAGACCCTTCCTTCTTCACGAAATCTCACCAACAAACCCGCTTGTTTCCTGTATCTCTGTGCTCGACCAAGATGATGAAGAAGTAGCGGTTCTTCTCAAAGACTCACAAAGCAGCCGAAGCGAGTGCTACCAATTGGACTCTTTCTTTGCCCAAGAAGATAACAATGTGGCTCAGATTTTCCGCACTGAAGTAAGCCCCATGATTCCAGGAATCTTCAATGGCTGCAACGCTACTGTGTTTGCTTATGGGGCTACAGGGAGTGGCAAGACATACACCATGCAAGGAACTGAGGAACAAGCTGGGTTGATACCACTGGCAATGTCCATGGTCCTGTCTATTTGCCAAAGGACTGGCAGCACAGCACTGGTTTCATACTATGAGGTCTACATGGACCGATGTTATGACCTCTTGGAGGTCAAAGCAAAGGAGATTTCAGTTTGGGATGACAAAGATGGACAAGTTCACCTCCGGGGACTATCTCAAGTTCCTATAAACACAATGTCGGAATTTCAAGAGGTTTTCTCCTGTGGAGTTCAGAGACGAAAAGTTGCACACACAGGCCTCAATGATGTCTCCAGTAGGAGTCATGGAGTGCTTGTGATATCTGTATCCACACCTTCTGATAGGACTGGAGGTGTTGTATGTGGAAAGTTGAATCTCATAGACTTGGCAGGTAATGAAGACAACAGAAGGACCTGTAATGAAGGGATTCGTCTCCAAGAGAGTGCCAAGATAAACCAGTCCTTGTTTGCACTGTCAAATGTGATATATGCTTTGAACAACAACAAACCAAGAGTACCCTACCGAGAAAGCAAATTGACTCGTATATTGCAGGATTCGCTGGGGGGAACTAGTCGTGCATTGATGGTTGCTTGCCTGAATCCAGGAGAATACCAGGAATCTGTTCATACTGTTAGTTTGGCCGCTCGGTCAAGGCATATCACTAATGTTGTGCCTTCAGCTCATAAAGAAGAGACCCCAAAAGTTATGGTTGACATGGAAGCCAAATTGAGAGCTTGGTTAGAATCAAAAGGCAAAGCAAAGAGCTCACAAAAACTAGGAGCATTCAATTCTCCACTGCCAAAGAAAACTCCCAGTTCTATCATTACATCTGCTAAAAGATCCGTTACCTTTAATAGTTCAGTGAAAGAAGGAAGAACTGCTACCAACCAAGATGCTAAACATACAAATGAAAGGGCCTTTGCTGTGGCGTTTAGAAATTTACTAGATGGTGAAGGTCCTTTTGATTCTTTCATGGAGGATGTACATGGTGGTGTTAAGGACAATAATGACAGAGAGAAAGAGCATCATGCCAATACGGCTGATAGGGGATCAGATGAAAATTTGCCTGTTGAGCCATTGAGCAAGGGAATGAACTCTCCTATTACAAATGAAAGTAAAGATGCAGTACAAAGTCCTTTAAGAAAAGCACTTTCCCCCATCAATGGCAATCAAAAGCCCCATGAGGCTTTGTCTTTGACACAAACACTTTTTTCTGCAAACTGCTCCACTAACAAAGGGTTACAAAAGAATGGCACCCCACTTGACAAATTCAGTACACGAAGTTCTGCCCTGAAGAACCATCTTGTTCAAGAATACATTGATTTCCTAAACAATGCAAGCAGAGAGGAACTACTAGAGTTAAAGGGTATAGGAGAGAAAATGGCAGAATACATAATTGGCCTTAGAGAAGAAAGCCCCCTGAAATCGTTAAGTGATTTGGAGAAGATTGGTCTCTCTTCGAAGCAGGTGCTATGTTCTCGAGTGACGACCTGA 1893 0.4374 MASSTLSSSSSIITPRTPNKLSNNPISISNVRVIVRVRVRPFLLHEISPTNPLVSCISVLDQDDEEVAVLLKDSQSSRSECYQLDSFFAQEDNNVAQIFRTEVSPMIPGIFNGCNATVFAYGATGSGKTYTMQGTEEQAGLIPLAMSMVLSICQRTGSTALVSYYEVYMDRCYDLLEVKAKEISVWDDKDGQVHLRGLSQVPINTMSEFQEVFSCGVQRRKVAHTGLNDVSSRSHGVLVISVSTPSDRTGGVVCGKLNLIDLAGNEDNRRTCNEGIRLQESAKINQSLFALSNVIYALNNNKPRVPYRESKLTRILQDSLGGTSRALMVACLNPGEYQESVHTVSLAARSRHITNVVPSAHKEETPKVMVDMEAKLRAWLESKGKAKSSQKLGAFNSPLPKKTPSSIITSAKRSVTFNSSVKEGRTATNQDAKHTNERAFAVAFRNLLDGEGPFDSFMEDVHGGVKDNNDREKEHHANTADRGSDENLPVEPLSKGMNSPITNESKDAVQSPLRKALSPINGNQKPHEALSLTQTLFSANCSTNKGLQKNGTPLDKFSTRSSALKNHLVQEYIDFLNNASREELLELKGIGEKMAEYIIGLREESPLKSLSDLEKIGLSSKQVLCSRVTT* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2160 630 SUPERFAMILY RuvA domain 2-like 566 616 IPR010994 -
Lja1g2160 630 SMART kinesin_4 28 361 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2160 630 MobiDBLite consensus disorder prediction 462 525 - -
Lja1g2160 630 ProSitePatterns Kinesin motor domain signature. 255 266 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lja1g2160 630 ProSiteProfiles Kinesin motor domain profile. 32 353 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2160 630 Pfam Kinesin motor domain 38 353 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2160 630 Gene3D - 561 628 - -
Lja1g2160 630 Pfam Helix-hairpin-helix motif 576 596 IPR000445 GO:0003677
Lja1g2160 630 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 21 623 - -
Lja1g2160 630 PRINTS Kinesin heavy chain signature 305 326 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2160 630 PRINTS Kinesin heavy chain signature 113 134 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2160 630 PRINTS Kinesin heavy chain signature 256 274 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2160 630 PRINTS Kinesin heavy chain signature 225 242 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2160 630 MobiDBLite consensus disorder prediction 462 482 - -
Lja1g2160 630 Gene3D Kinesin motor domain 28 394 IPR036961 -
Lja1g2160 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 381 IPR027417 -
Lja1g2160 630 PANTHER BNACNNG40390D PROTEIN 21 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2160 Lja-Chr1 25101662 25108278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2160 106 392 Calmodulin-binding Proteins AT5G65930 35.135 1.19e-45 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2160 K10403 - gmx:100804591 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2160 1 25101662 25108278 Lja1g2160 1 25101662 25108278 ECH