Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2159 ATGTATTTCCCTTGGTGTCACTTCACTTGCTTTTTTCTTCTTTTGGGTTTTGGAGTAGACCTAGCAAATTCTCAGACTTGTAGAAGAGTTGGAGGAAAGATCCTTCCTTGCTGGACAATAGTTGTGGATCCATCAGGGCATGGAAACTTCACTACCATACAATCTGCTATTGGTTCAGTCCCTTCCAACAATAGGCATTGGGTTTCCATCAATGTGAAGGCAGGTATCTACAGGGAAAAGTTGGTAATTCGTGATGACCAGCCTTACATTTTACTACAAGGAGAGGGAAAGACGAAAACCCTTGTTGAGTGGGGTGACCATGATACAACATCCCAGAGCCCTACATTCTCCACCATGGCAGAATATATTGTCGTCAAGTATATCAGTTTTATTAATTCATACAATAACAACCCCCCACAACCTGCAGTAGCTGCCTTGGTAAGCGGTGACAAGTCTTACTTCCTTAGTGTTGGTTTCTTTGGTTTTCAAGATACTTTGTGGGATAATTATGGACATCATTACTACAAGTCTTGTACCATCCAAGGTGCTGTTGATTTTATCTTTGGTGCAGGACAATCATTATACGAGGATTGTGACATAAGAGTTATTGCTGGGCGTTTAGGTCCAGGAATTTCTGGTTATATCACAGCACAAGGGAGGACAAGTCTGAGGGAAACAAATGGGTTCACTTTTAAAAGTTGTTTTATAAATGGAACTGGTACAACTTACTTGGGGAGACCTTGGAAAGAATATGCTAGAGTTATTTTTCACAACTGCAAAATATTAAACATTATACAACCTCAAGGTTGGGATAATAGACCTTACCCAGTGAATCAGCTATCATTCGGAGAGTATAACAACTATGGACCAGGTTCTCACTCGCCCCAGCGTGTTAAATGGATTAATAAATTGAGTTTATCAACAGTTCAGTGGATGTCGAGTTTTGCTTTTATTGACACTGTTGGTTGGCTTAATATCAGCCTAAGGATCGGTTATTAA 999 0.4014 MYFPWCHFTCFFLLLGFGVDLANSQTCRRVGGKILPCWTIVVDPSGHGNFTTIQSAIGSVPSNNRHWVSINVKAGIYREKLVIRDDQPYILLQGEGKTKTLVEWGDHDTTSQSPTFSTMAEYIVVKYISFINSYNNNPPQPAVAALVSGDKSYFLSVGFFGFQDTLWDNYGHHYYKSCTIQGAVDFIFGAGQSLYEDCDIRVIAGRLGPGISGYITAQGRTSLRETNGFTFKSCFINGTGTTYLGRPWKEYARVIFHNCKILNIIQPQGWDNRPYPVNQLSFGEYNNYGPGSHSPQRVKWINKLSLSTVQWMSSFAFIDTVGWLNISLRIGY* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2159 332 Gene3D - 38 329 IPR012334 -
Lja1g2159 332 ProSitePatterns Pectinesterase signature 2. 180 189 IPR033131 -
Lja1g2159 332 Pfam Pectinesterase 40 308 IPR000070 GO:0030599|GO:0042545
Lja1g2159 332 PANTHER PECTINESTERASE 10-RELATED 22 325 - -
Lja1g2159 332 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 22 325 - -
Lja1g2159 332 SUPERFAMILY Pectin lyase-like 36 325 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2159 Lja-Chr1 25092843 25101382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2159 39 271 Carbohydrate Esterase AT2G19150 45.378 5.90e-69 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2159 - - gmx:100819252 412.149