Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2158 ATGCTAAGATTCCCCTCTCCTGTGTTCTCATACTCAAACATGGAATGTCTCTTAGATGATGAACCCTTTAATCATAACCAGAACAACTTCAATAAAGAAAGGGTGTCCTCATCAGAGTACTCATTTCCAAATCAACCACAGCCTGCAGTAGTACTGCAAGCTAAGGTGGTGGAAATGTTAACTGCTCCATCCCCAGACACCAAGAAACTTAACCACAATGCTAGTGAACGTGATCGCCGCAAAAAGATCAATAGCTTGATTGCTTCACTTCGTTCACTGCTTCCTGCAGGGCAAGATCAAATGAAAAAAATGAGCATTCCGGCCACAATTTCTGGAGTCATAAAGTATTTACCAGAGTTACAACAGCAAGTAAAAGGACTAACTAAGAAAAAAGAGAAGCTTCTATCAAGAATTTCTCAGCAAGGAGATGCAGTAAACGAAGAATCTCGAAAAAGGAAGAAGTTTATTAATCCCCATCACAACTCTGCAGATTTTATAGTTTCAAATAGCTGGCTCAATGATTGTGAGGCTGCAATTCATATTATTTCCTCTAATTATGAGGAGGCTCACAATCACAAGACTCCACTGCCCGAGATCATACTGTGTTTAGAAAATAATGGGTATTTTCTGCTAAATGCTTCTTCTACTGAAACCTTTGGAGGAAGAGTCTTCTACATCTTGCATTTTCAAGTGGAAAAAACTCATAGATTAGAGTCTGATATTATAACTCAGAAGCTTTTGTCAATATATGAGAAGAAGCAAAGAATGTTCTAG 774 0.3837 MLRFPSPVFSYSNMECLLDDEPFNHNQNNFNKERVSSSEYSFPNQPQPAVVLQAKVVEMLTAPSPDTKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKGLTKKKEKLLSRISQQGDAVNEESRKRKKFINPHHNSADFIVSNSWLNDCEAAIHIISSNYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQVEKTHRLESDIITQKLLSIYEKKQRMF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2158 257 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 252 - -
Lja1g2158 257 Gene3D - 61 157 IPR036638 GO:0046983
Lja1g2158 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 120 IPR011598 GO:0046983
Lja1g2158 257 SMART finulus 73 126 IPR011598 GO:0046983
Lja1g2158 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 139 IPR036638 GO:0046983
Lja1g2158 257 CDD bHLH_AtORG2_like 68 141 - -
Lja1g2158 257 Coils Coil 117 137 - -
Lja1g2158 257 Pfam Helix-loop-helix DNA-binding domain 68 121 IPR011598 GO:0046983
Lja1g2158 257 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 252 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2158 Lja-Chr1 25088508 25089722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2158 67 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.969 2.14e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g2158 HLH 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2158 - - gmx:100790212 263.848