Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2157 ATGAAGAGTGTAATGGCCAAAAAATATGAGGGTCCTGCAATTGGAATTGATTTAGGCACTTCCTACTCATGTGTTGCTATATGGCAAGAACAGAACAATCGAGCTGAGATCATTCCAAATGAACAAGGAAACAGAACCACTCCTTCCTTGGTTGCTTTCACTGATACACAAAAGTTGATTGGTGATGCTGCCAAAAATCAGGCTGCAACAAACCCATCAAACACTGTCTTTGATGCAAAGAGGTTGATCGGTAGGAAATACAGTGATTCCGTTGTTCAGGATGATGTTAAGCTCTGGCCTTTTCAGGTCATTGCTGGTACTGATGACAAACCCACTTTTGTTGTTAAGTACAAGGGTGAAGTGATGCAGCTTGTTCCTGAGGAAATATCATCCATGGTTCTCACAAAGATGAAAGAGATTGCTGAGGCATTTTTGGGGTCACCAGTGAAAAATGCGGTTATCACTGTGCCTGCTTATTTCAATGACTCTCAGCGAAAATCCACCAAAGATGCCGGTGCAATTGCTGGTCTTGATGTTATACGGATAATCAATGAACCAACTGCTGCAGGTCTCGCATATGGCATACAAAAGAAATCTACTTTTGATGTTAAGCACAATGTTTTCATCTTTGATCTTGGTGGCGGCACTTTTGATGTGTCTATCCTCACAATTGAGGATGATAGCTTTGAAGTGAAGGCCACTACTGGTGATACTCACCTTGGAGGAGAGAACTTCAATAACAGAATGGTCGACCATTTTGTTAAGGAGTTCAAGAGGAAGCACAAGAAGGACATTAGTGGTAACCCAAGGGCCTTAAGGAGGCTGAGAAGTGCGTGTGAGAAGGCAAAGAGGACACTCTCATTCGCAGTAGATACCACCATTGAGGTAGATGCTTTATTTGAGAGAACTGACTTGTATTCAACAATTACTCGCACCAGGTTTGAGGAACTGAACAATGATCTCTTTATGAAGTGTATGGAGACAGTTGAGAGGTGTCTTGAAGACTCTAAGATGGACAAGAGTGACATAGATGATGTTGTTCTTGTTGGTGGTTCTTCTAGGATTCCCAAAGTACAGCAGCTATTGCAGGATTTTTTCAAAGGGAAGGAACTATGCAAGGGCATCAATCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTGCAAGCTGCTTTGTTGGGTGAAGAAGGCATTAAGAATGTTCCAAACTTGGTGTTGATGGATGTTACGCCCCTGTCTTTAGGGATGGGGGTAAGAAGAGATCTCATGTATGTAATGATTCCAAGGAATACCACTATCCCGACAAAGAAGAAACAAATATGCAAAACAACTAAAGATAACCAACGCAAAGTCTCGATTAAGGTTTATGAGGGTGAGAGAGTTAGAGCCAGTGGTAACAATTTGTTAGGCTCTTTTATTCTTTCTGGCCCACCTTCTGCTCCTCGCGGCCATCCTTACAATGTATGCTTTTCCATAGATGAAAATGGCATTCTAACTGTTTCAGCTGAGGAAAGAACCACTGGTAATAAGAATGAGATTACCATTACCAGTGAAACACACAGGCTGTCAGCTAAAGAAATCAGAAGAGTGATTAAAGAAGCGGTGAATTATGAGGTTGATGATATGATGTTCAAGAACAAGAGGAAAGCGATGAATGCTCTTGATGATTACCTTTACAATATGAACAAACTTATGAAGGATACGTGTGTCAGTTCTAAGCTTCCTCCAAAGGTCCAAGTTAAGATCAATTCAGCTATAGTAAAGGGCAAAAATTTGCTTGATGGTGGCAAGGAGCAAGAGGCGTTTGTGTTTGTTGACTTATTAAGGGAGCTTAAGAGCATATTTGAACCTGCAATGGCCAATATCAACAATGGTTGGACTCATGAGGACAGTGATCAGGATTATGGTAGCACTTCTGGGTTGGTCCAATCAGTTGCTGCTTGGATTAGGCGCAAGTTGAAGAAGCTTAATATATCTGTTTGA 1980 0.4162 MKSVMAKKYEGPAIGIDLGTSYSCVAIWQEQNNRAEIIPNEQGNRTTPSLVAFTDTQKLIGDAAKNQAATNPSNTVFDAKRLIGRKYSDSVVQDDVKLWPFQVIAGTDDKPTFVVKYKGEVMQLVPEEISSMVLTKMKEIAEAFLGSPVKNAVITVPAYFNDSQRKSTKDAGAIAGLDVIRIINEPTAAGLAYGIQKKSTFDVKHNVFIFDLGGGTFDVSILTIEDDSFEVKATTGDTHLGGENFNNRMVDHFVKEFKRKHKKDISGNPRALRRLRSACEKAKRTLSFAVDTTIEVDALFERTDLYSTITRTRFEELNNDLFMKCMETVERCLEDSKMDKSDIDDVVLVGGSSRIPKVQQLLQDFFKGKELCKGINPDEAVAYGAAVQAALLGEEGIKNVPNLVLMDVTPLSLGMGVRRDLMYVMIPRNTTIPTKKKQICKTTKDNQRKVSIKVYEGERVRASGNNLLGSFILSGPPSAPRGHPYNVCFSIDENGILTVSAEERTTGNKNEITITSETHRLSAKEIRRVIKEAVNYEVDDMMFKNKRKAMNALDDYLYNMNKLMKDTCVSSKLPPKVQVKINSAIVKGKNLLDGGKEQEAFVFVDLLRELKSIFEPAMANINNGWTHEDSDQDYGSTSGLVQSVAAWIRRKLKKLNISV* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2157 659 Gene3D - 550 642 IPR029048 -
Lja1g2157 659 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 398 549 IPR029047 -
Lja1g2157 659 Gene3D - 198 372 - -
Lja1g2157 659 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 621 - -
Lja1g2157 659 PANTHER HEAT SHOCK PROTEIN 70KDA 8 621 IPR013126 GO:0005524|GO:0140662
Lja1g2157 659 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 549 623 IPR029048 -
Lja1g2157 659 Gene3D Actin; Chain A, domain 4 241 324 - -
Lja1g2157 659 SUPERFAMILY Actin-like ATPase domain 204 391 IPR043129 -
Lja1g2157 659 Gene3D - 14 390 - -
Lja1g2157 659 PRINTS 70kDa heat shock protein signature 215 225 - -
Lja1g2157 659 PRINTS 70kDa heat shock protein signature 375 395 - -
Lja1g2157 659 PRINTS 70kDa heat shock protein signature 42 54 - -
Lja1g2157 659 PRINTS 70kDa heat shock protein signature 402 421 - -
Lja1g2157 659 PRINTS 70kDa heat shock protein signature 12 25 - -
Lja1g2157 659 PRINTS 70kDa heat shock protein signature 64 72 - -
Lja1g2157 659 PRINTS 70kDa heat shock protein signature 343 359 - -
Lja1g2157 659 PRINTS 70kDa heat shock protein signature 482 498 - -
Lja1g2157 659 PRINTS 70kDa heat shock protein signature 152 172 - -
Lja1g2157 659 SUPERFAMILY Actin-like ATPase domain 13 197 IPR043129 -
Lja1g2157 659 ProSitePatterns Heat shock hsp70 proteins family signature 2. 209 222 IPR018181 -
Lja1g2157 659 ProSitePatterns Heat shock hsp70 proteins family signature 1. 16 23 IPR018181 -
Lja1g2157 659 Gene3D - 77 132 - -
Lja1g2157 659 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 399 554 IPR029047 -
Lja1g2157 659 ProSitePatterns Heat shock hsp70 proteins family signature 3. 346 360 IPR018181 -
Lja1g2157 659 Pfam Hsp70 protein 13 596 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2157 Lja-Chr1 25082042 25085082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2157 5 640 Calmodulin-binding Proteins AT3G12580 64.521 0.0 822