Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2154 ATGGGTAACAGAATCGGAAACCTCTGCCTCTGCTCCGCCGGCACCGGCGTCGGAGACATCTCCGGCAGATCGGAGAACAAATGCGATAAAGCTAATGTAAACTCCATCTTCTACGTCAGACCAGACCCATGTGAGTTTTCCGGCGATGGCGCCGCCACCATCGTGCCATTCCGGTCCGTTTCCGTAGCCACCGTGAGCGCAAACTCGTCAGCAGCACCGTCCACTTGCCTTGATGACTCTGTTCAGCACAGCATCGCTCTGGATTCCTCTGCTTCATTTGAGAGCTCTAATTCTTTTACTTCTGCCGCGACGGTGCCTCTGCTGCAACGTGGCTTCGCTGTGGGTGGCTTCAGGCCAAGTCCCCGTGATGGCGGCGCTTTGAACGGTGGTTCTGAACCTGTGGAGAAACAGAGAAGAAGCTTGAAGAAGGTTCTGAGCAGAGCATTTTTAAGCTCACTGTCTCTTGGGAAACGGCCAATTCTGAAGAAAAAAGAGAATGGTAATGCCAGAGTGAGTTGCAGTGGTCCTCTTGATGGTGATGATGATGATGATCTTGGTGAGTGTGATGATGATCTGTTCATGGGGTGTCAGAATCTTCATTGGACTCAAGGTAAAGCCGGTGAGGATCGTGTGCACATTGTGATTTGTGAGTATCATGGATGGGTTTTTGCGGGGATTTATGATGGATTCAATGGCCCTGATGCCACTGATTACCTTCTCAATAATCTGTTTTCTGCTATTCATGATGAGATCAATGTGCTGCTTTGTGGTCACATTTCTGAATCGGAGTTATTAGAGGAAAACTGTCCAATGGGAAGTGAAAAGTCAGGTTTGGATTGTAAGAAAGATGATGTGTTAGAATCACTTTCTGAGGCGTTGAAGAAGACAGAGGATGCGTTTCTGAGAACTTGTGATGAGATGATTGCTCATAATCCTGTGTTGGCTATGATGGGTTCTTGTGTTCTGGTGATGGTGATGAAGGGAGAAGATGTTTACTTGATGAACGTCGGAGACAGTCGTGCTGTGTTAGCTACTCAGTCTGGGGATCCCATTCAGCTCACAGAAGAGCATAGCACTCATGTCAAAGAGGAGGTTTACAGAATCAGAAGGGAGCACCCAGATGACCCTTCTGCAGTGACTAATGGCCGAGTGAAAGGTTACTTGAATGTCACAAGGGCTTTCGGAGCTGGATTCCTTAAACAGCCTAAACAAAACAATGCAGTGCTGGAGACTTTCAAAGTTAACTACATAGGGGAATCCCCATACATAACTTGTTCCCCTTCCCTCCACCACCACAGGCTCAGCCCAGATGACAAATTCCTAATACTGTCTTCTGATGGACTTTACCAATTCTTCACCAATGAAGAAGCCGTTGCCAAAGTAGACTCATTCATCACCATGTTTCCTGATAGAGATCCAGCACAGCTTCTTGTTGAAGAAGCTCTAAGTCGAGCAGCCAATAAAGCAGGATTGGAGCTCCATGAGCTGCTGGATATCCCACAAGGGGAACGGCGTCTTTACCATGATGACATTTCTATAATTATAATCTCATTTGAGGGAAAAATATGGCGTTCTTTGGTGTAA 1584 0.4697 MGNRIGNLCLCSAGTGVGDISGRSENKCDKANVNSIFYVRPDPCEFSGDGAATIVPFRSVSVATVSANSSAAPSTCLDDSVQHSIALDSSASFESSNSFTSAATVPLLQRGFAVGGFRPSPRDGGALNGGSEPVEKQRRSLKKVLSRAFLSSLSLGKRPILKKKENGNARVSCSGPLDGDDDDDLGECDDDLFMGCQNLHWTQGKAGEDRVHIVICEYHGWVFAGIYDGFNGPDATDYLLNNLFSAIHDEINVLLCGHISESELLEENCPMGSEKSGLDCKKDDVLESLSEALKKTEDAFLRTCDEMIAHNPVLAMMGSCVLVMVMKGEDVYLMNVGDSRAVLATQSGDPIQLTEEHSTHVKEEVYRIRREHPDDPSAVTNGRVKGYLNVTRAFGAGFLKQPKQNNAVLETFKVNYIGESPYITCSPSLHHHRLSPDDKFLILSSDGLYQFFTNEEAVAKVDSFITMFPDRDPAQLLVEEALSRAANKAGLELHELLDIPQGERRLYHDDISIIIISFEGKIWRSLV* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2154 527 ProSiteProfiles PPM-type phosphatase domain profile. 192 518 IPR001932 -
Lja1g2154 527 Gene3D - 185 524 IPR036457 -
Lja1g2154 527 CDD PP2Cc 205 487 IPR001932 -
Lja1g2154 527 SUPERFAMILY PP2C-like 204 519 IPR036457 -
Lja1g2154 527 PANTHER PROTEIN PHOSPHATASE 2C 26 259 IPR015655 GO:0004722|GO:0006470
Lja1g2154 527 PANTHER PROTEIN PHOSPHATASE 2C 274 527 IPR015655 GO:0004722|GO:0006470
Lja1g2154 527 SMART PP2C_4 192 516 IPR001932 -
Lja1g2154 527 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 26 259 - -
Lja1g2154 527 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 274 527 - -
Lja1g2154 527 Pfam Protein phosphatase 2C 288 486 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2154 Lja-Chr1 25064667 25067493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2154 1 527 PP2C-type Phosphatase Gene Family AT2G28890 44.545 5.20e-161 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2154 - K01102 gmx:100804061 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2154 1 25064667 25067493 Lja1g2154 1 25064667 25067493 ECH