Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2153 ATGTCTTCATCTCCCTCGTTCTCCATAACCAACCTTCGCCTTCGCACTCTCGTCGTCTTCTTCAGAAAATTGACCACCAAGGACTACGCAATCGCCGCATTCGCCTTCTTCCTTCTCCTCTCTCTCGCTTTCTTCTCCCAATTGCATCACCACCACCATTCCCACTCTCTCTCCAATCTCATCCCCTTCACTCCTCTCCCTAACGCCATCCTAAGAGGCGCAATTTGCTTGGATGGAAGTGCCCCCGGCTTCCATTTCCAAAAGGGTTTCGGATCCGGATCTCGCAGTTGGTTGCTCCATCTCGAGGGAGGAGGATGGTGCAATTCGATATCTTCATGTTCTCGCCGAAAATTTACTGCTTTGGGTTCATCCAAGTATATGGAGACGGTGGTTCCTTTTTCAGGGATTCTAAGCTCTGACCGGTCTCAGAATCCTGATTTCTTTAACTGGAACAAGGTGATGATACGGTATTGTGATGGTGCATCATTTGCTGGTCACCCAGAGAGCGAGAAAGGAAGTGGGTTGTTCTTCCGAGGCCAGATCATATGGGAAGCTATTATGGATGAACTCTTATCAATTGGCATGTCTAAAGCAAAACAGGCTCTGCTTTCAGGATGCTCTGCAGGAGGGTTGGCAACTCTTGTACATTGTGATGACTTTCGACAAATACTTCCAAAGGAGACCACTGTCAAATGTCTTGCTGATGCAGGCTTCTTCCTAGATGAGAAGGATATTCGTGGAAATAACACAATGAGATCTTTCTATAATGATGTTGTGCAGCTTCAGGGTGTTGCAAAAAGTCTGCATAAAGAGTGCCTTGCCAAAATGGAACCATCTAAGTGTCTCTTTCCATCGGAAATTCTTAAAAACATAAAGACTCCAGTGTTCCTTGTTCACTCTGCTTATGATTTTTGGCAGATACGCAATATTTTGGTACCTGAAGGATCAGATCCCTCTGGTCACTGGAAAAGCTGCAAATTGAACATTCACAATTGCAATGCAAACCTGATTGATATACTTAACCGCTTCCGTAGTTCTTTGCTGAAGGCTTTGAATGAATTCCAGCAACGGAAGCAGATTGGAATGTTTGTAAATTCTTGCTTTATCCATTGCCAGACTTGGAGGGGAGAGACATGGTATTCACCCAATTCTCCTAAAATACAAAATAAGACGATTGCTGAATCTGTTGCTGATTGGTTCTTTGACCGAGAAGTGATCAATCTTATTGACTGCCCTTATCCATGCAATCCTACTTGTCGTAATTTGGATTTTACCAGAGTATAA 1284 0.4408 MSSSPSFSITNLRLRTLVVFFRKLTTKDYAIAAFAFFLLLSLAFFSQLHHHHHSHSLSNLIPFTPLPNAILRGAICLDGSAPGFHFQKGFGSGSRSWLLHLEGGGWCNSISSCSRRKFTALGSSKYMETVVPFSGILSSDRSQNPDFFNWNKVMIRYCDGASFAGHPESEKGSGLFFRGQIIWEAIMDELLSIGMSKAKQALLSGCSAGGLATLVHCDDFRQILPKETTVKCLADAGFFLDEKDIRGNNTMRSFYNDVVQLQGVAKSLHKECLAKMEPSKCLFPSEILKNIKTPVFLVHSAYDFWQIRNILVPEGSDPSGHWKSCKLNIHNCNANLIDILNRFRSSLLKALNEFQQRKQIGMFVNSCFIHCQTWRGETWYSPNSPKIQNKTIAESVADWFFDREVINLIDCPYPCNPTCRNLDFTRV* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2153 427 Pfam Pectinacetylesterase 59 404 IPR004963 GO:0016787
Lja1g2153 427 PANTHER PECTIN ACETYLESTERASE 4 22 419 - -
Lja1g2153 427 PANTHER NOTUM-RELATED 22 419 IPR004963 GO:0016787
Lja1g2153 427 SUPERFAMILY alpha/beta-Hydrolases 165 313 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2153 Lja-Chr1 25053350 25059095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2153 22 391 Carbohydrate Esterase AT3G09410 57.480 6.23e-160 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2153 K19882 - gmx:100792819 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2153 1 25053350 25059095 Lja1g2153 1 25053350 25059095 ECH