Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2149 ATGTCTCCAGGAACATGTTCATCATCATCAAGATGGAGCCCTACAACTGAGCAGCTCATGATCTTAGAGGAACTGTACAGGAGTGGGATTAGAACTCCCAGTGCTTCTCAAATTCAGCAAATAACAACCCACCTTTCTCTCTATGGCAGGATAGAAGGGAAGAATGTGTTCTATTGGTTTCAGAACCATAAAGCTAGGGATAGACAAAAACTAAGGAGGAAACTCAACAAGCAACTGCAGCTACAGCAACAACTCCAACTCCAACTCCAACTCCAACTGAATAATCAGGATATCACAAACCCTTTTGTTGGTAGCTTCGGTTATCCCCCTGGATCTACTACTAGAGAATTTTCCTTTTTTAACTCACCTAGCTTTCTTTTTCAGGGAGGAGCTGCAGATACATCAGGAGGGGCAATCAATTGCAAATGGAATGCTTATAATCCACAGTATTTGGTGGAGAAGAAAGAGATTGCATTCTGCAACTATGGTTGGACACTGGTGGATGCTAATCATCAAGGGTCTTCAGCTTGTTGCACTCGACCTCTTAAGACCCTTGATCTCTTTCCACTCACAACTACCACCACTAGCAAAGAAGACTGCACCACCAAATGA 612 0.4314 MSPGTCSSSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSLYGRIEGKNVFYWFQNHKARDRQKLRRKLNKQLQLQQQLQLQLQLQLNNQDITNPFVGSFGYPPGSTTREFSFFNSPSFLFQGGAADTSGGAINCKWNAYNPQYLVEKKEIAFCNYGWTLVDANHQGSSACCTRPLKTLDLFPLTTTTTSKEDCTTK* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2149 203 Gene3D - 6 70 - -
Lja1g2149 203 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 202 IPR044555 GO:0003700|GO:0099402
Lja1g2149 203 Coils Coil 68 88 - -
Lja1g2149 203 SMART HOX_1 7 74 IPR001356 GO:0003677
Lja1g2149 203 Pfam Homeodomain 9 69 IPR001356 GO:0003677
Lja1g2149 203 SUPERFAMILY Homeodomain-like 10 69 IPR009057 -
Lja1g2149 203 ProSiteProfiles 'Homeobox' domain profile. 5 70 IPR001356 GO:0003677
Lja1g2149 203 PANTHER WUSCHEL-RELATED HOMEOBOX 3 7 202 - -
Lja1g2149 203 CDD homeodomain 11 70 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2149 Lja-Chr1 25023045 25024009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2149 1 77 Wox Gene Family AT2G28610 79.221 4.10e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lja1g2149 Homeodomain 5.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2149 - - gmx:102663963 236.884