Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2147 ATGTCCATTACTGATTTTCCTGTTGGATTAGAATCCCACTTGCAAGAAGTGATTAAGTTGATTGAAAGCCAATCCAGCAAAGTTTGTATGGTAGGAATCTGGGGAATGGGAGGGTTGGGTAAAACAACCACAGCCAAAGCCATCTTCAATCAAATCCATCGCAAATTCATGTGTACAAGTTTCATTGAAAACATTAGAGAAGTTTGTGAGAATGATAGTAGAGGGCATATGCATTTGCAAGAGCAACTTCTTTCTGATGTCCTGAAAACTAAGGAGAAGATACATAGTATTGGGAGAGGGACAGCTATGATTAAGAAAATACTTTCTGGAAAAAGGGCTCTGGTTATACTTGATGATGTGACCACATCTGAGCAATTGAGAGCCTTGTGTGGAAATCGCGAATGGTTTGCATCAGGAAGTGTGATAATTGTTACAACCAGAGATGTGCGATTACTCAATTCACTTAAAGCTGACTATGTGTACACAATGAAGGAAATGGATGAAGATGAGTCGCTTGAGCTTTTCAGTTGGCATGCTTTTGGAGAAGCTAGTCCAAGAGAAGATTTCAATGAACTATCCAGAAGAGTAGTTGCTTACTGCGGAGGGTTACCTCTAGCTCTTGAAGTCCTTGGATCTTACTTAAATGAGAGGGAGGAAATAGAATGGGAAAGTGTATTGTCAAAACTAGAGAGAATTCCCAATGATCAAGTGCAACAGAAACTCAGAATAAGTTATGATGGTTTAAAGGATGAGCTGGAAAAGGATATATTTCTTGACATATGTTGTTTCTTTGTTGGTAAAGACAGAGCCTATGTTACAGATATATTAAATGGCTGTGGACTTTATGCTGATATTGGAATAACTCTCCTCATAGAGAGGAGCCTCCTTCAGGTTGAAAAGAATAACAAGCTTGGAATGCATGATCTTGTTCGAGATATGGGAAGAGCAATTGTTCGTGAAAGTTCGACGAAAGATCTTGGGAAGCGTAGTCGGTTGTGGTTTCATGAGGATGTCCATGATGTTTTGACCAAAAATACGGGAACAGAAACTGTTGAGGGATTGATTTTGAAGTTGCAAAGCACCAGCAGAGTTTGCTTCAGTACTAACGCTTTCAAGGAAATGAGAAAACTTAGACTTTTACAACTTGAATGTGTTGACCTCACTGGAGATTACCGGCATCTGTCCCATGAACTGAAATGGGTCTATTGGAAAGGATTTACTTCCACATATATACCTGATCATTTTTATCTGGGAAATCTAGTTGTTTTAGAGTTAAAGTACAGCAGTGTTAAACAAGTCTGGAAGGAAACCAAGCTGCTGGAGAAGCTAAAAATTCTCGATCTCAGTCATTCCTGGTACTTGGAAAACACCCCTGATTTTTCAAAACTACCAAATCTAGAAAAGCTCATTCTAAAGGATTGTTCAAGTTTGTTCGAGCTACACCATACCATCGGAGATCTCAGCAATCTTCTTCTAATAAATTTGGAGGGCTGTACAAGCCTTAACAATCTCCCAGGGAAGACCTATCAGTTAAAGTCAGTGAAAACTCTCATCATTTCGGGTTGTTCAAAAATTGACAAGTTGGAAGAAGATATAGCGCAGATGGAATCCTTGACAACACTCATTGCAAAAGATACGGCTATAAAGGAAGTGCCCTATTCAATACTAGGATTGAAAAGCATAGGGTACATATCTCTTTGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCTCTCTTGCGGTCTTGGATTTCACCAACAATGAATCCCCTATCCCATATTCCCCTATTTGCGGCCATGTCATTGCCTCTAGTTTCTATGGATATACAGAATTATAGTTCAGGCAATTCATCTTCATGGCTTAGCAGCCTATCAAAACTTAGAAGTGTTTGGATACAATGTCACTCGGAGATTCAACTAGCTCAAGAGTCAAGAAGAATTCTTGATGATCAATATGATGTAAACTCTATGGACTTGGAAGCATCATCATCATCATCATATGCATCACAAATCTCAGATTTTTCCTTGAAATCACTTTTGATTAGATTGGGAAGTTGCTACACAGTCATTGATACTCTTGCCAGCAGCATATCACAGGGATCAACAACCAACGCTTCTAGTAATTTTTTCCTTCCGGGTGGTGATGATCCTTATTGGTTAGCCTATAAAGGTGAAGGACCTTCAGTACATTTTCAAGTTCCAGAGGATCGTGATTGTTGCTTGAAGGGAATAGTTTTATGTGTTGTTTATTCATCAACACCTGAAAATATGGCAACGGAATGTCTTACAAGTGTCATGATAAATAATCACACAAAATTCACCATTCAAATCTACAAGCAAGGTACTGTAATGTCCTTTAATGATGAAGATTGGGAGAGTGTAAAATCAAATCTTGATCCTGGTGACGATACCGAGATTGTTGTTTCTTTTGGGCGTGGATTGACTGTTAAGGAGACAGCTGTGTATCTAATATATGCTCAGTCAATCATTATGGAAATTGAGCCATCAATTACTGTGGAAGTTGAATTTGAGCCATCAGCTAATGAGAAAATGGAGCCATCATCTGAAGTGAACATGCAGCCATCACCTGACTTGAAAATGGAGCCATCACCAAAGCCAACTAAAAATATCTTTACAAGAATTGCAAAGAGAATTGGAAAATGTTCATGCTTGAACCAGAATTGA 2688 0.3873 MSITDFPVGLESHLQEVIKLIESQSSKVCMVGIWGMGGLGKTTTAKAIFNQIHRKFMCTSFIENIREVCENDSRGHMHLQEQLLSDVLKTKEKIHSIGRGTAMIKKILSGKRALVILDDVTTSEQLRALCGNREWFASGSVIIVTTRDVRLLNSLKADYVYTMKEMDEDESLELFSWHAFGEASPREDFNELSRRVVAYCGGLPLALEVLGSYLNEREEIEWESVLSKLERIPNDQVQQKLRISYDGLKDELEKDIFLDICCFFVGKDRAYVTDILNGCGLYADIGITLLIERSLLQVEKNNKLGMHDLVRDMGRAIVRESSTKDLGKRSRLWFHEDVHDVLTKNTGTETVEGLILKLQSTSRVCFSTNAFKEMRKLRLLQLECVDLTGDYRHLSHELKWVYWKGFTSTYIPDHFYLGNLVVLELKYSSVKQVWKETKLLEKLKILDLSHSWYLENTPDFSKLPNLEKLILKDCSSLFELHHTIGDLSNLLLINLEGCTSLNNLPGKTYQLKSVKTLIISGCSKIDKLEEDIAQMESLTTLIAKDTAIKEVPYSILGLKSIGYISLCGYEGLSRDVFPSLLRSWISPTMNPLSHIPLFAAMSLPLVSMDIQNYSSGNSSSWLSSLSKLRSVWIQCHSEIQLAQESRRILDDQYDVNSMDLEASSSSSYASQISDFSLKSLLIRLGSCYTVIDTLASSISQGSTTNASSNFFLPGGDDPYWLAYKGEGPSVHFQVPEDRDCCLKGIVLCVVYSSTPENMATECLTSVMINNHTKFTIQIYKQGTVMSFNDEDWESVKSNLDPGDDTEIVVSFGRGLTVKETAVYLIYAQSIIMEIEPSITVEVEFEPSANEKMEPSSEVNMQPSPDLKMEPSPKPTKNIFTRIAKRIGKCSCLNQN* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2147 895 Pfam NB-ARC domain 12 242 IPR002182 GO:0043531
Lja1g2147 895 Gene3D - 165 249 IPR042197 -
Lja1g2147 895 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 826 IPR044974 GO:0006952
Lja1g2147 895 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1 826 - -
Lja1g2147 895 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 260 IPR027417 -
Lja1g2147 895 Gene3D - 4 161 IPR027417 -
Lja1g2147 895 Gene3D Ribonuclease Inhibitor 348 682 IPR032675 -
Lja1g2147 895 SUPERFAMILY L domain-like 306 634 - -
Lja1g2147 895 PRINTS Disease resistance protein signature 200 214 - -
Lja1g2147 895 PRINTS Disease resistance protein signature 30 45 - -
Lja1g2147 895 PRINTS Disease resistance protein signature 107 121 - -
Lja1g2147 895 PRINTS Disease resistance protein signature 438 454 - -
Lja1g2147 895 MobiDBLite consensus disorder prediction 846 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2147 Lja-Chr1 25005864 25010588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2147 8 556 WRKY Transcription Factor Family AT5G45050 31.661 4.69e-76 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2147 - - mtr:MTR_8g011850 1086.25