Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2141 ATGCAAATGGCGGCGGAGAGCAAAGGTGGTGGTGTTGTTGTTGGGGTTCTCCGGAGCCTGATCAACGTTGCCAACGAAATCTCTCACATCACCGCCGTCAACCGCCTCCTCAAACCCCAATGCCGTGACCTCAGTCGCAGAATCACCGTCCTCGCGCCCCTATTTCACGACCTGCTCGACGTGTTCTCCTCCGTTCCGCACAATGCTCTCGTTTCGCTCCACCAAACCCTCCTCTCCGCCAAGGAACTGCTCCTCTTCGCTACCCAACGAAGCCAATTCTACATGATACTCGAGTGGGAGCAAATTAAGCAAAAATTCTGTGATCTCGCTGCTCGTTTTCAACAGGCAATGATCGAGATCTCTTGGGATAAGCTTGATGTTTCTCTAGAAGTTAAGGAGCAGGTTGCACTTGTGACTGCTCAGTTTAAAAGAGCCAAAGACAATTTTGATCCTCCAGGTTTTGAGCTTCATGAGCTCCTGGTGTCTATTTTTAAACAGGGCTGTGACGTGAATAATGCTGGACCTGCTGAGCTCCGATTGATCTGTGAAAAGCTGCAAATTATGAACGCAGAAGACCTCAAACAAGAGTCAATCGCTCTGTGTAAGATGGTTGAGGACAAGGGTGGTTGTTTTGAGAAAAACATGCAGGAGATGTCTATGGTGTTGAAAAAATTTGAAGATTTCATGCTGATGGAATCTGCAGACTTTGGTTCCTCTCCTCGTACTGGCGAGTTGTGCTGGAAACTAAGTTCTCAGTTACCGGTTATACCAGATGAGTTTCGCTGCCCGATATCTCTAGAGCTGATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATATGAACGAGGCTGCATAAAGAAATGGCTTGACGCCGGGCATGGAACATGTCCTAAGACTCAGCAGATTCTTCCCAGTCCCATTCTCATACCTAACCATGTTCTATACAACCTGATATCAAATTGGTGTGAGGCAAATGGAATGGAACCACCTAGAAGGTTAGGAAGTTTACGGCTCTGTAAGGCAACATCAGATGGAGCTTCGAAATTATTAGATATTGATGCCCTAATCAGCAAACTTACTTCTAGTGACATTGAGAGTCGGCGATGTGCAGCAGGGGAGCTCCGTCTTCTTGCCAAGCACAATGGTCATAATCGAATGCTGATTGCCGAAGCTGGTGCTATACCCCTCCTTGTTGATCTTCTCTATGTACCTGATACTGGAACCCAAGAGCAGGCTGTTACTGCTATTCTCAACCTGTCTATCAACGTGGATAATAAAGAGTGCATCATGGCTTCTGAGGCTGTGCTGGGAATCATTCATGTGCTAAACAATGGTAGTATGGAAGCTCGGGAAAATGCAGCTGCCACCCTTTTCAGCCTCTCCGCCGTGGATGAGAACAAAGTGGCAATTGGTGCATCTGGAGCAATCAAGGCACTAGTTACTCTATTTTGCGAAGGAAGTCAAAGAGGGAAGGTGGATGCTGCTGCGGCACTATTCAATCTGTGTTTATATCAAGGGAACAGAGGACGAGCAATTAGGGCTGGTATCGTGCCCAAGTTGATCGAAATGCTAACCGAACCTTGTGGGGAGATGAGGGATGAGGCATTGGCGATCATTGCTATAGTAGTTAGCCATCCTGATGGAAAAGCAGCAATTAGTTCTATGAACGTTGTGGTCACTTTGGTGGAATTAATCAATAATGGATCTCCTATTAACAAAGAGAATGCAACTTCTGTGCTGGTGCACCTCTGTAGTGGAGATCCACTACATCTGCAAATTGTCAATTCAATTGGGGTGATTGATTCTCTCAAGGACCTGGCAGAAAATGGTTCAGAAAGGGGAAAACGTAAAGCTGTGCAGCTTCTTGAGTTGATTGGCATTTACTGA 1890 0.464 MQMAAESKGGGVVVGVLRSLINVANEISHITAVNRLLKPQCRDLSRRITVLAPLFHDLLDVFSSVPHNALVSLHQTLLSAKELLLFATQRSQFYMILEWEQIKQKFCDLAARFQQAMIEISWDKLDVSLEVKEQVALVTAQFKRAKDNFDPPGFELHELLVSIFKQGCDVNNAGPAELRLICEKLQIMNAEDLKQESIALCKMVEDKGGCFEKNMQEMSMVLKKFEDFMLMESADFGSSPRTGELCWKLSSQLPVIPDEFRCPISLELMKDPVIICTGQTYERGCIKKWLDAGHGTCPKTQQILPSPILIPNHVLYNLISNWCEANGMEPPRRLGSLRLCKATSDGASKLLDIDALISKLTSSDIESRRCAAGELRLLAKHNGHNRMLIAEAGAIPLLVDLLYVPDTGTQEQAVTAILNLSINVDNKECIMASEAVLGIIHVLNNGSMEARENAAATLFSLSAVDENKVAIGASGAIKALVTLFCEGSQRGKVDAAAALFNLCLYQGNRGRAIRAGIVPKLIEMLTEPCGEMRDEALAIIAIVVSHPDGKAAISSMNVVVTLVELINNGSPINKENATSVLVHLCSGDPLHLQIVNSIGVIDSLKDLAENGSERGKRKAVQLLELIGIY* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2141 629 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Lja1g2141 629 Pfam Armadillo/beta-catenin-like repeat 384 421 IPR000225 GO:0005515
Lja1g2141 629 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Lja1g2141 629 Gene3D - 13 123 IPR036537 GO:0007166
Lja1g2141 629 SMART arm_5 464 504 IPR000225 GO:0005515
Lja1g2141 629 SMART arm_5 505 545 IPR000225 GO:0005515
Lja1g2141 629 SMART arm_5 546 586 IPR000225 GO:0005515
Lja1g2141 629 SMART arm_5 423 463 IPR000225 GO:0005515
Lja1g2141 629 SMART arm_5 382 422 IPR000225 GO:0005515
Lja1g2141 629 SMART Ubox_2 259 322 IPR003613 GO:0004842|GO:0016567
Lja1g2141 629 ProSiteProfiles U-box domain profile. 255 329 IPR003613 GO:0004842|GO:0016567
Lja1g2141 629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 329 IPR013083 -
Lja1g2141 629 Gene3D - 338 626 IPR011989 -
Lja1g2141 629 CDD RING-Ubox_PUB 260 302 IPR045210 -
Lja1g2141 629 PANTHER U BOX DOMAIN-CONTAINING 14 626 - -
Lja1g2141 629 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Lja1g2141 629 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 626 - -
Lja1g2141 629 SUPERFAMILY RING/U-box 250 331 - -
Lja1g2141 629 SUPERFAMILY ARM repeat 352 626 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2141 Lja-Chr1 24946747 24954384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2141 18 626 U-box Gene Family AT3G46510 50.889 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2141 - - lja:Lj0g3v0076489.1 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2141 1 24946747 24954384 Lja1g2141 1 24946747 24954384 ECH