Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2138 ATGATGGAGTGTGGAGTTGAGTTGCAAGGAGGAGTAGATCTGCATGCAACAGAAACAGTTGACCCTGTTGTTGGTTTTGGCACCACCTTGGAGGAAGAAAGAGATATGTGGCTGAACACTACTGACCAAGATGATCTCTTAGGTGTAAACGATGCTACTGCTTCCATGTTCTACTCTGATTTCCCCTCTCTCCCTGATTTCTCATGCATGTCATCATCATCATCTTCTTCATCCTCAACACCTGCACTTCCATTGAACAACATAGCATGCTCCACCACCACAACCTCCTCCTGTTCCTCCGCCTCTTCCTCTTCTGCCGCTTCGTGGGCGGTTCTGAAATCAGATGCTGATGTGGAAGAGAAAAACGGTTACATGCAGCAGCAGCATCAGCATCAACAGCAAGATCCGATAGATCATGCAATAACAAGAACACCGGTTACTGGGGCTTTGTCTTCAACTGCTTCCATGGAGATTTCACAACAACAGCATGATCCTGTTATTGTTGGAGATTGCATGGATGGTGTGATGGAGATGGATACTTTTGGCTACATGGAGCTTTTAGAAGCCAATGAGTTTTTTGACCCTGCTTCCATTTTTCAGAATGAAGAGAATCCATTAGTGGAGTTCACACAGCAAGATCAACATCCACATGCAACGGTGTTGCAGAACATGGAATTATCTGCACCTTTTCAAGGGACAACAGAGGAGGATCAGATTCTTGAATCTGTTACTGCTACCAACAATAATGAGGAAGAAATTATCCAAAGAGAGGAAGAAGGTGGTATTGGTGGTGCAGATGATGAAATGAGCATGGTGTTCTTGGAGTGGTTGAAGTCGAACAAGGATAGCGTCTCTGCCAATGACTTGAGAAACGTGAAGCTCAAGAGGGCAACCATAGAAAGCGCCGCGAGGCGATTGGGTGGAGGGAAAGAAGGGATGAAGCAATTGCTAAAGCTCATTCTTGAATGGGTTCAAACCAGCCATCTTCAGAATAAGAGGCGCAAGGACAATAACAACAACAACAATATTGCACTGCCACAACAATTTCTGGATCCTTGTCAGAACCAGAACACTAATGGTAATTCATTTGCACCTGATCAATCAAACTCTTGTTTCAACCAGAGTACTACAACCTGGCTCTCTTCGCCACCGCAGCCGCCAACAAATGCTACTTTTGGAGCAGATCAAGCTCCTCTCATGGTGGCTCCGTTTTCACAACCCATGGTTGGATATGTGGGTGACCCTTACTCTGCTTCAAATAACCATAATAACCCTTACCAGCCTGCTGCTACTGAATACCACATGATGGAATCAACTCATCCATGGCCTGCTCATCCTAATTCTCAGTTCGCTGTTGCTTCTCACTATAATCAATCATTTGGGGACAACAGCCTTCTTCAACCAGCGGCGTTCGGAGGCTACGGTGGCAACCAGTATCCTTATCAGTTTTTTCATGGCCCTGGTGATAGGTTGATGAGATTAGGACCCTCGGCTACAAAAGAAGCGAGGAAGAAGAGGATGGCGAGGCAGAGAAGGGTTTTGTCTCATCACAGGCATCATAATAATCACCATCAAAATCAAGCTTCTGACCCACATGCAATGTTGGGAACTGATAATTGCACCGCTGTTATGGCTGCAAATCCGGCCAATTGGATGTACTGGCAGCAGACCATGGCACCAGTGGTACCGGCTGAGCCACCACAGGCGCAGCAACCAGCTCATCAGCCGGCAGAGCGGCCCTCCATGCAAACACAGAATAGTCATCAGGGCCGAGGCGCTGCGTCAGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGGTTCCTTCTGCAAAAGGTGTTGAAGCAAAGCGATGTGGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCAGAACTGGAGGCAAGAGATGGAATTTCCATAACAATGGAAGACATTGGAACTTCTCGCGTTTGGAACATGCGCTACAGATACTGGCCAAACAACAAAAGTAGAATGTATTTGCTTGAGAACACTGGGGACTTTGTTAGAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATATTCAGATGTGAAGTGTGGCAAATTTATGATTAGAGGAGTGAAAGTGAGGCAACAGGGGTCAAAACCAGAGACCAAGAAATCAGGAAAATCGCAGAAAAACCAGCAGAATGGGATCAATGCAGCAAATACAGCTGGAGCTGCTGTTGGTAATAATGGCATACCATCTTCACAGAAGCAAAAAACAGAGAAGGGAGTAAATTAA 2292 0.459 MMECGVELQGGVDLHATETVDPVVGFGTTLEEERDMWLNTTDQDDLLGVNDATASMFYSDFPSLPDFSCMSSSSSSSSSTPALPLNNIACSTTTTSSCSSASSSSAASWAVLKSDADVEEKNGYMQQQHQHQQQDPIDHAITRTPVTGALSSTASMEISQQQHDPVIVGDCMDGVMEMDTFGYMELLEANEFFDPASIFQNEENPLVEFTQQDQHPHATVLQNMELSAPFQGTTEEDQILESVTATNNNEEEIIQREEEGGIGGADDEMSMVFLEWLKSNKDSVSANDLRNVKLKRATIESAARRLGGGKEGMKQLLKLILEWVQTSHLQNKRRKDNNNNNNIALPQQFLDPCQNQNTNGNSFAPDQSNSCFNQSTTTWLSSPPQPPTNATFGADQAPLMVAPFSQPMVGYVGDPYSASNNHNNPYQPAATEYHMMESTHPWPAHPNSQFAVASHYNQSFGDNSLLQPAAFGGYGGNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRVLSHHRHHNNHHQNQASDPHAMLGTDNCTAVMAANPANWMYWQQTMAPVVPAEPPQAQQPAHQPAERPSMQTQNSHQGRGAASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQGSKPETKKSGKSQKNQQNGINAANTAGAAVGNNGIPSSQKQKTEKGVN* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2138 763 MobiDBLite consensus disorder prediction 506 534 - -
Lja1g2138 763 SUPERFAMILY DNA-binding pseudobarrel domain 610 706 IPR015300 -
Lja1g2138 763 Pfam B3 DNA binding domain 612 708 IPR003340 GO:0003677
Lja1g2138 763 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 754 IPR044800 GO:0003700
Lja1g2138 763 SMART B3_2 611 711 IPR003340 GO:0003677
Lja1g2138 763 MobiDBLite consensus disorder prediction 726 763 - -
Lja1g2138 763 MobiDBLite consensus disorder prediction 564 602 - -
Lja1g2138 763 ProSiteProfiles B3 DNA-binding domain profile. 611 713 IPR003340 GO:0003677
Lja1g2138 763 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 754 - -
Lja1g2138 763 MobiDBLite consensus disorder prediction 506 523 - -
Lja1g2138 763 MobiDBLite consensus disorder prediction 574 593 - -
Lja1g2138 763 CDD BfiI_C_EcoRII_N_B3 609 710 - -
Lja1g2138 763 Gene3D - 607 727 IPR015300 -
Lja1g2138 763 MobiDBLite consensus disorder prediction 713 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2138 Lja-Chr1 24878716 24882845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2138 3 757 B3 DNA Binding Superfamily AT3G24650 46.683 4.08e-166 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g2138 B3 3.5e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2138 - - gmx:100795226 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2138 1 24878716 24882845 Lja1g2138 1 24878716 24882845 ECH