Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2137 ATGTCAATGCCGAGGCAAGCCTTGAACAACCACAACAACCGCCACCAAATGTCGAGGCAAGTTTTCATCCATCACCATCTCCAGTACTGTGTTTTCCTGTTTGCAGTTCTTGTCCCTCTTTCATTTGCTGCAAATGATGAAGTTAGTGTCTTATTTTCATGGATGCATAGCTCTTCACCTTTTTCTGACTGGAACCCTTTGGACTCTAGTCCTTGCAATTGGTCTCATATCAAATGCTCTCCACAGAACCTTGTCACTGAGATTAACATTCAAACAGTTGAGTTAGCCCTTCCTTTTCCTTCCAGTATCTCTTCCCTTCCCTTCCTTCAAAAGCTAGTGATTTCTGGTGCTAATCTCACTGGTGCTATCTCACCTGACATTGGAAACTGCCCTGAGCTCACACTCATTGATCTTAGCTCAAATAGTCTTGAGGGAGAAATTCCTTCAAGCATTGGCAAGCTCAAGAATCTCCAACACTTGATCTTGAACTCTAACCAACTCACTGGATCAATCCCAAGGGAGCTTGGTGACTGTGTTAGTCTCAAGAGCCTTGACATCTTTGACAACAATCTCAGTGGGGACCTTCCTGCTGAGCTTGGAAAACTTTCAAATCTTGAGGTTCTAAGAGCAGGAGGAAACAAAGGCATTGTGGGGAAGATTCCAGCTGAGCTTGGAGAATGCAGGAATTTGACAGTGTTGGGTTTTGCTGACACAAAAATTTCTGGTTCATTGCCTTCTTCTCTGGGTAAGCTAACCATGCTTCAGACCATTTCTATTTACAATACTATGCTCTCTGGTGAGATTCCACCTGAAATAGGAAACTGTTCAGAGCTTGTGAATTTGTTTTTGTATGAGAATGATCTCTCTGGTTCCCTTCCAAGAGAGCTAGGTAAGCTTCAGAAGTTGGAAAGGATGCTGCTGTGGCAAAATAATGTCGTTGGGAGCATACCTGAAGAGATTGGAAACTGCAGAAGCTTGAAGATTCTTGACCTCTCCATAAATTTTATCTCAGGTGGAATACCTCAAAGTTTGGGGAAACTTTCAAATCTTGAAGAGCTTATGCTGAGTAACAACAACATCTCTGGTTCAATACCACCTGCTCTTTCCAATCTCACAAACCTCATGCAGTTGCAGTTAGATACAAATCAGCTATCAGGTTCAATTCCACCTGAGCTTGGGAAGTTGACAAAGCTAACAGTGTTTTTTGCTTGGCAGAACAATCTTGAAGGTAGCATTCCATCAGCATTGGGAGATTGTGGAAGCCTTGAGGCTTTGGATTTGTCATACAATACACTCACTGATAGCTTACCCCCAGGCTTGTTTAAGCTTCAAAATTTAACAAAGCTCCTACTAATCTCTAATGAAATTTCTGGCCCCATTCCCCCTGAGATTGGTAACTGCAGCGCTCTCATTCGTCTCCGGCTTGTAGACAACCGAATCAACGGTGAGATACCGAGAGAAATTGGCTTCCTCAACAACCTCAATTTCCTTGATCTGTCTGAAAATCAACTTACTGGGTCAGTACCTCCTGAGATGGGAAACTGTAAAGAACTGCAAATGCTGAATCTGAGTAATAATTCCCTTTCTGGAACTTTGCCTAGTTATTTGTCTTCTCTTCTAAGGCTAGAGGTTTTGGATGTTTCTCTGAATAACTTTTCTGGTGAGGTTCCAATTAGTATTGGCCAACTCACCTCACTTCTTAGAGTCATGCTGAACAAAAACTCTTTCTCTGGACCAATTCCCTCCTCACTTGGGAAATGTTCAGGTCTTCAACTGCTTGACCTTAGCAGCAACATGTTCTCAGGGAGAATCCCACCAGAACTGTTTCAAATTGAAGCACTTGATATTGCACTAAATTTGAGCCATAATGCATTATCTGGAGCAATCCCACCAGAGATTTCAGCATTGAACAAGCTGTCAGTTCTAGACCTTTCACACAACCAACTTGAAGGTGACTTGATGGTGTTTTCAGGGCTTGAGAATCTTGTTTCTCTGAACATTTCATACAACAGGTTCACTGGTTTTCTACCAGACAGCAAGCTATTCCACCAACTATCAGCATCAGACGTGGCCGGAAATCAAGGCTTGTGTTCCAATGGCCATGATTCATGTTTCGCTAGCAATGCTGCAATGACAAAAATGCAAAATGACACTGATTCTAAGAGATCAGAGATAATCAAAGTGGCCATTGGATTGCTCAGTGCCTTGGCTGTTGTAATGGCAATATTTGGAGTTGTTACAGTCTTTCGAGCGAGGAAAATGATTCGAGACGACAATGATTCTGAGATGGGAGGAGATTCATGGCCTTGGCAGTTCACCCCATTCCAGAAGGTAAATTTCTCTCTGGAGCAAGTTTTGAAATGTCTGGTGGAATCCAATGTGATTGGAAAGGGGTGTTCAGGGATAGTTTATCGCGCAGAAACGGAAAATGGGGATGTCATTGCTGTGAAAAGACTATGGCCAACAACAATGGCAGCTAGATATGATACTCAAAGTGACAAGTTAGCAGTGAATGGAGGCGTTCGAGATTCCTTTTCAGCTGAGGTAAAAACTCTCGGTTCAATTCGCCACAAGAACATTGTCAGGTTCTTAGGTTGCTGCTGGAACAGAAATACAAGACTGCTTATGTATGACTACATGCCAAATGGGAGCCTTGGAAGTCTGCTTCATGAACAAAGTGGCAATTGCTTGGAATGGGATATCAGATTTCGAATAATCCTCGGAGCAGCTCAAGGTTTGGCTTATTTACACCATGACTGTGCTCCTCCCATTGTTCACAGGGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATAGCTGATTTTGGGCTTGCCAAACTTGTTGATGATGGAGACTTTGCACGTTCTTCTAGTACACTAGCTGGTTCCTATGGTTACATAGCTCCTGAGTATGGCTACATCATGAAGATAACAGAGAAAAGTGATGTTTACAGCTATGGTATTGTTGTGTTAGAGGTACTAACAGGGAAGCAACCAATTGATCCAACAATCCCTGATGGACTGCATATTGTTGATTGGGTAAGACAGAGAAGAGGGGGAGTGGAAGTGCTAGATGAAAGCTTACGAGCTCGACCGGAATCAGAAATCGAGGAGATGTTGCAGACCATAGGTGTGGCTCTGCTGTGTGTAAACTCAAGCCCAGATGACAGGCCAACCATGAAAGATGTGGTAGCAATGATGAAAGAAATTAGGCAAGAGAGAGAGGAATTTATGAAAGTTAGCATGCTTAGTATTGATGGGCCTTCAGCAAAGGTCCAAAAAGAAAGTAATCATTCCAATGAAGAACCAATGGCAGTGATGAAACATGCATGCCCAAGCTGCAGCAGCAGCAGCAGCAGCAGCACAAGCCAGAATCTACATTACTCTCAAACACCAAAGTAA 3417 0.4299 MSMPRQALNNHNNRHQMSRQVFIHHHLQYCVFLFAVLVPLSFAANDEVSVLFSWMHSSSPFSDWNPLDSSPCNWSHIKCSPQNLVTEINIQTVELALPFPSSISSLPFLQKLVISGANLTGAISPDIGNCPELTLIDLSSNSLEGEIPSSIGKLKNLQHLILNSNQLTGSIPRELGDCVSLKSLDIFDNNLSGDLPAELGKLSNLEVLRAGGNKGIVGKIPAELGECRNLTVLGFADTKISGSLPSSLGKLTMLQTISIYNTMLSGEIPPEIGNCSELVNLFLYENDLSGSLPRELGKLQKLERMLLWQNNVVGSIPEEIGNCRSLKILDLSINFISGGIPQSLGKLSNLEELMLSNNNISGSIPPALSNLTNLMQLQLDTNQLSGSIPPELGKLTKLTVFFAWQNNLEGSIPSALGDCGSLEALDLSYNTLTDSLPPGLFKLQNLTKLLLISNEISGPIPPEIGNCSALIRLRLVDNRINGEIPREIGFLNNLNFLDLSENQLTGSVPPEMGNCKELQMLNLSNNSLSGTLPSYLSSLLRLEVLDVSLNNFSGEVPISIGQLTSLLRVMLNKNSFSGPIPSSLGKCSGLQLLDLSSNMFSGRIPPELFQIEALDIALNLSHNALSGAIPPEISALNKLSVLDLSHNQLEGDLMVFSGLENLVSLNISYNRFTGFLPDSKLFHQLSASDVAGNQGLCSNGHDSCFASNAAMTKMQNDTDSKRSEIIKVAIGLLSALAVVMAIFGVVTVFRARKMIRDDNDSEMGGDSWPWQFTPFQKVNFSLEQVLKCLVESNVIGKGCSGIVYRAETENGDVIAVKRLWPTTMAARYDTQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHEQSGNCLEWDIRFRIILGAAQGLAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYIMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQRRGGVEVLDESLRARPESEIEEMLQTIGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREEFMKVSMLSIDGPSAKVQKESNHSNEEPMAVMKHACPSCSSSSSSSTSQNLHYSQTPK* 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2137 1138 ProSiteProfiles Protein kinase domain profile. 789 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2137 1138 ProSiteProfiles Leucine-rich repeat profile. 349 372 IPR001611 GO:0005515
Lja1g2137 1138 ProSitePatterns Protein kinases ATP-binding region signature. 795 817 IPR017441 GO:0005524
Lja1g2137 1138 Gene3D Ribonuclease Inhibitor 47 155 IPR032675 -
Lja1g2137 1138 SUPERFAMILY Protein kinase-like (PK-like) 771 1072 IPR011009 -
Lja1g2137 1138 Gene3D Ribonuclease Inhibitor 242 340 IPR032675 -
Lja1g2137 1138 Gene3D Ribonuclease Inhibitor 532 616 IPR032675 -
Lja1g2137 1138 Gene3D Ribonuclease Inhibitor 617 704 IPR032675 -
Lja1g2137 1138 SUPERFAMILY RNI-like 112 485 - -
Lja1g2137 1138 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 23 1096 - -
Lja1g2137 1138 SUPERFAMILY L domain-like 436 697 - -
Lja1g2137 1138 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 23 1096 - -
Lja1g2137 1138 MobiDBLite consensus disorder prediction 1116 1138 - -
Lja1g2137 1138 Pfam Protein tyrosine and serine/threonine kinase 792 1070 IPR001245 GO:0004672|GO:0006468
Lja1g2137 1138 ProSitePatterns Serine/Threonine protein kinases active-site signature. 924 936 IPR008271 GO:0004672|GO:0006468
Lja1g2137 1138 MobiDBLite consensus disorder prediction 1093 1138 - -
Lja1g2137 1138 ProSiteProfiles Leucine-rich repeat profile. 638 660 IPR001611 GO:0005515
Lja1g2137 1138 Gene3D Ribonuclease Inhibitor 156 241 IPR032675 -
Lja1g2137 1138 Gene3D Phosphorylase Kinase; domain 1 773 879 - -
Lja1g2137 1138 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515
Lja1g2137 1138 Pfam Leucine rich repeat 324 384 IPR001611 GO:0005515
Lja1g2137 1138 SMART LRR_typ_2 659 684 IPR003591 -
Lja1g2137 1138 SMART LRR_typ_2 587 611 IPR003591 -
Lja1g2137 1138 SMART LRR_typ_2 299 323 IPR003591 -
Lja1g2137 1138 SMART LRR_typ_2 636 658 IPR003591 -
Lja1g2137 1138 SMART LRR_typ_2 347 370 IPR003591 -
Lja1g2137 1138 SMART LRR_typ_2 491 515 IPR003591 -
Lja1g2137 1138 SMART LRR_typ_2 419 443 IPR003591 -
Lja1g2137 1138 SMART LRR_typ_2 371 395 IPR003591 -
Lja1g2137 1138 SMART LRR_typ_2 516 539 IPR003591 -
Lja1g2137 1138 SMART LRR_typ_2 154 178 IPR003591 -
Lja1g2137 1138 SMART serkin_6 789 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2137 1138 PRINTS Leucine-rich repeat signature 636 649 - -
Lja1g2137 1138 PRINTS Leucine-rich repeat signature 494 507 - -
Lja1g2137 1138 Gene3D Transferase(Phosphotransferase) domain 1 880 1092 - -
Lja1g2137 1138 Gene3D Ribonuclease Inhibitor 436 531 IPR032675 -
Lja1g2137 1138 Gene3D Ribonuclease Inhibitor 341 435 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2137 Lja-Chr1 24860190 24864027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2137 42 1077 Receptor kinase-like Gene Family AT5G56040 47.962 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g2137 PK_Tyr_Ser-Thr 2.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2137 - - gmx:100815339 1863.58