Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2131 ATGTCTGGCCAGAGAAGCTCAAGAGCTTTAAAGTTTGCAGAGGAAGAGATTAATGATCTTGTGTCAAGGTTGCAACTACTGCTTCCCCAGCTGAACCAAAGAAGCAACTCAAGGCAATCTGCGTCCAAGATCTTGCAGGAAACCTGCTGTCACATTAGGAAGCTGCAGAAAGAGGTGGAAGACCTCAGCGAGAGGTTGACAGAGCTGATGAATTCTGTGGATGTCAGTGATATCGACAGAAGAACTTTACAAAACTTTTTGTCACTATAA 270 0.4407 MSGQRSSRALKFAEEEINDLVSRLQLLLPQLNQRSNSRQSASKILQETCCHIRKLQKEVEDLSERLTELMNSVDVSDIDRRTLQNFLSL* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2131 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 74 IPR036638 GO:0046983
Lja1g2131 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 55 IPR011598 GO:0046983
Lja1g2131 89 PANTHER DNA BINDING PROTEIN 1 87 IPR044172 -
Lja1g2131 89 Gene3D - 14 87 IPR036638 GO:0046983
Lja1g2131 89 PANTHER DNA BINDING PROTEIN 1 87 - -
Lja1g2131 89 Pfam Helix-loop-helix DNA-binding domain 16 56 IPR011598 GO:0046983
Lja1g2131 89 Coils Coil 45 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2131 Lja-Chr1 24806206 24808333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2131 5 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 53.521 1.69e-18 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g2131 HLH 4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2131 - - gmx:100790746 97.4413