Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2130 ATGGAGGTGCAGTTCAATCTCTGCTTCCTCCTCATTACGCTTCTTCTGGCTACCACCAAAGCCAACCAATCAAGGGTTGTGGAGAGAGAAGAGACATTGCAGATTCAGAGCTTGAAGAATTCGTCAATGGCGGAAAGGTCTTTCAACGAGCATGCAGTTGAAAATCCAGAGGAGATTGCTTCCATGGTTGAAACAAGCATACGCAATCACACGCAAAGAAGGAACCTAAATTTCTTCTCATGCGGGACCGGGAACCCAATCGACGACTGCTGGCGCTGCGACAAGCGGTGGTACCTCCGCCGAAAGCGACTAGCCAACTGCGCCATCGGATTCGGCCGCAACTCCATCGGCGGCCGCGACGGAAGGTACTACGTCGTAACAAACCCCAACGACGACGACGCCGTCAACCCTAGACCCGGCACCCTCCGTTACGCCGTCATTCAAGACAAACCCTTATGGATCGTGTTCAAGAGAGACATGGTGATCACTCTCAAGCAAGAACTCATCATGAACAGCTTCAAGACCATCGATGGTCGCGGTGCCAATGTTCACATCGCGTTTGGAGCTTGCATCACGATCCAGTTTGTCACGAATGTGATCATCCATGGTGTTCATATCCATGATTGTAAGCCGACTGGGAATGCCATGGTTCGAAGCTCTCCGTCGCATTATGGATGGAGGACAATGGCTGATGGTGATGGGATTTCGATCTTTGGGTCGAGTCATATTTGGATTGACCACAATTCGCTTTCTAATTGTGCTGATGGACTCGTTGATGCTATTATGGGGTCTACTGCGATTACCATTTCTAACAACTTCTTCACTCGCCACAATGAGGTGATACTGCTGGGTCACAGTGATACTTATGTGCGTGATAAGCAGATGCAAGTAACCATTGCATTCAACCATTTTGGGGAGGGTCTTATTCAAAGAATGCCAAGGTGTAGACATGGTTATTTCCACGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCGATTGGAGGCAGTGCTAATCCAACAATTAACAGCCAAGGCAACAGATACCTTGCCCCTGTGAACCCTTTTGCTAAGGAGGTGACAAAGAGAGTGGATACAGGGGCAGGTGTATGGAGAGGTTGGAATTGGAGGTCACAGGGAGACCTTCTGCTGAATGGAGCCTTTTTCACTCCTTCAGGTGCAGGGGCTGCTGCAAGCTATGCTAGAGCTTCAAGTTTGTCTGCAAAATCATCTTCTTTAGTTGGTACCCTTACCTCTGGCTCTGGTGTTCTTAACTGCCGCAGGGGTGCCATGTGTTAA 1302 0.49 MEVQFNLCFLLITLLLATTKANQSRVVEREETLQIQSLKNSSMAERSFNEHAVENPEEIASMVETSIRNHTQRRNLNFFSCGTGNPIDDCWRCDKRWYLRRKRLANCAIGFGRNSIGGRDGRYYVVTNPNDDDAVNPRPGTLRYAVIQDKPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQFVTNVIIHGVHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITISNNFFTRHNEVILLGHSDTYVRDKQMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVDTGAGVWRGWNWRSQGDLLLNGAFFTPSGAGAAASYARASSLSAKSSSLVGTLTSGSGVLNCRRGAMC* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2130 433 SMART amb_all 159 356 IPR002022 -
Lja1g2130 433 Pfam Pectate lyase 167 348 IPR002022 -
Lja1g2130 433 PRINTS Pollen allergen Amb family signature 231 252 IPR018082 -
Lja1g2130 433 PRINTS Pollen allergen Amb family signature 167 183 IPR018082 -
Lja1g2130 433 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Lja1g2130 433 PRINTS Pollen allergen Amb family signature 404 427 IPR018082 -
Lja1g2130 433 PRINTS Pollen allergen Amb family signature 107 124 IPR018082 -
Lja1g2130 433 PRINTS Pollen allergen Amb family signature 131 156 IPR018082 -
Lja1g2130 433 PRINTS Pollen allergen Amb family signature 375 399 IPR018082 -
Lja1g2130 433 PRINTS Pollen allergen Amb family signature 333 352 IPR018082 -
Lja1g2130 433 PANTHER PECTATE LYASE 37 430 - -
Lja1g2130 433 Gene3D - 84 426 IPR012334 -
Lja1g2130 433 SUPERFAMILY Pectin lyase-like 62 427 IPR011050 -
Lja1g2130 433 PANTHER PECTATE LYASE 18-RELATED 37 430 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2130 Lja-Chr1 24773193 24779645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2130 14 433 Polysaccharide Lyase AT4G13710 72.854 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2130 K01728 - gmx:100809277 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2130 1 24773193 24779645 Lja1g2130 1 24773193 24779645 ECH