Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2129 ATGGCACAAAATAAGACAGGGAAGTTGATAGGTGCAAAGACTGGGAAGGACTCCGGCTCGTTTCCTCAATATAGCCAACCGGAATTACCCTGTGTTGGTTCAAATGCCGGACATAATGTACATAATCTTCCTATACAGGCAGGGGAGGAATTTTCTGTGAATTATGGTCATGGTGGAGTTGCTGCTGGAAGGGTTCCTGCTTCACCTGATATATCTCGAAATCGTGAGAATAGGTTTGGGTTGAATGGGGAGAATGGCCATGTGAGATATGAAGACCTTACTAATATTTTGGGGTTGAGGAGAATGGACTCTGAGACTTCTTCTGAAATAGGCGACTTTGTCTCTACAAAACAGCCAGCACATGAGATGGAAAATGGGGCTCGGGTAAACATTTCAAGCAAAATTCAAAAGGGAGATGGTGATAGGGGCCATGCATTGAGAAAGGCTGTGTGTGAATCAATCGGTGACCAACCTGGTATTGGGTCAGCTGTACCTGTACCACACCTTCACAGAAAAGAAACTTCTCAGTCCAGTGGATTTCTTGGCTCCGGAATTTTAGATGACTCTCTGTCTGGAAAAATGAAGTTCCTATGTAGCTTTGGTGGCAAAATATTACCGAGGCCCGGTGATGGGAAACTCAGATATGTAGGGGGATTTACCCACATTATATCTATCCGAAAGGATATTTCATGGGAAGAGCTTGTGAAGAAGACCTTAGGGATTTGCACTCAACCTCACACCATCAAATACCAGCTTCCAGGGGAGGATCTTGATTCCCTAATATCTGTCTCCTCTGATGAGGATCTTCAAAATATGATAGAGGAATACCATGGGATTGAAAATCATGAAGGTTCTCAAAAACTTAGGATATTTTTAGTTCCTTTGGGTGAATCTGAAGAGACACCTTCAACTGATGCAAACACAGTTGAGCAGAATAACCCTGATTACCAATATGTTGTTGCTTTAAATGGCATAGGAGAACCTAGTCCCAGGAAAAACATTGCTGGCCAGAGTTTGACAAATGAAGCAAGTCAGTCAGGGACAACTTTTAATTTTACTCCATCTTTTCAGAGAACTCCTCCAGATGTCTCTTCTCCTTTGGACCTCAGGGATGGTATTAATACTTCAAATCCAGATGGAATTTTGAATGATTCCATGTATATGAGAGAATCCTTTCCAATTTCTCCAACTGCAGTGCAAGTTGCAGGTTCTGGCACAGGTTATGTTCAATTTCTTGGTAACAACTCATGCCAGGGAAGTGTTGAGAGCAGCACATCATTTTTTACTGCTCAGCTTCACCCTGAGAACTCGGGCATAAGCACTGCTGATTGCAGATATCCTCAACAAGTGGCTGTTTCTTTGATAAACGACAGACACCATCCTGGTGATATTGGTCAGCCCACGAAGCTCAATGGGAAGTATTTTGATAACTACAATTCCCGGAAGGAGTTAATGACTCCCATATATGTGAACCAAAGTGATGGTTACAGTGATGAAGGTTTTGGTGAAAGTTCCTTGCCAAAGGATAGAAAATTCTGCTCTGGGAATCCTATTTCATACTTGAATGACCCAATCTGCCAACAGGCGGAATCATATGGAATTACTGACTCCCCTCATGGAATGCCTCATGCTTTTTCTGACTCACAGTTGCATGAGAGTGGAGCAAGGTCTGGTTACTGCTCACAAGAAGGAATTGGCCAATCTTTCTCTTTGAACCTTGAAAAGGCTCAATTATCTTCATTGTTAGTCTCCAGAGGCTCACAAGCAAACCTTATGGAAGGTCAGAATGATTCTGTTCTCCATCATCCCCAAGTACAAAGGAAGGTACCAAAAGTGGGGTTAGCTGAGCAGCACAGACAGCAAGATTTGTCATCTTCTTCTCCATACTCTGAATCATTAGGAGTGAATGGTCCTATTCATAAGGATAGCATTTTCACTGAAAGCAGGTACCTTGTTTCTCAAAATGACTTAAATGGATCTAGCTCTGTAGAAAAGGATATTCAGGAACAATCTGTGAAATTAGGAAGGATGAAGATAATTGAAGAAAAGAATCCAATTCCCAGGAAAGATTCCAAGGTTTATGAGTTGGAATCAACTGTCGTTGATACCGGAGCTGTGACTGAATTGCATCTTTTGGACTCCCTCCCTACTAGTAACTTAAATGCTAAGATTAATATGCAAAATAATTGGGAACTGTCTTCTGAGGAGAGACATCCTTCATCATCAGGCATGATGGGACTCTCTTTACATAGTTTTGGGGACAAGACCCCATCTAATCTTCTTCCCATTAGCCAAAAGACTGGTGATGGTAAAAATTGTGCTTTGGCTGAAGGTCTGAATGGTGAACAAGGAAATGATTTTCTGTTGACAGGAAATTTTGATTTAAATGCTCCAATTTTAAAATGTGAAGAAATATCTTGTGATAAAATTGCTGTTAGAGATCATATGTTCAAGCTGTCCATTGACCCAGATTCTCAGACATCTGCACAAATCCAGCCTTCTCTGAATGAGATTGCTGCAGGTTTTCATGATACTCAAACAGTAAACTCGGAAAGTCTGTATCCTGCTATAAACTTACCAGTGAATGGCCTGGATAATCCTAGCAAGAAAATTTATTTTGAAAAGGCACCTTTTGCTGATGACTTATTTACCAGAACTGATAAAATAGATCAGTTTATCCATGAACACACTGCCTCTGGACAGTCAAAAGTGGATGATATAATTCCGCAGTCAAAAAACTTAGAAAGGTGTCAAGATGCAAATCGAGTGGAGCCATTTCTCATAATAGATGATTTGACTTGTCTTGTTCCTCCATTTATTGAGTCATCTTCTGTTGGCACCCCACATATTTTGCATGAAGTTGGAAGAGATCTATCTCCATCTAATACAGAGGCTGGGAGCATCATCCCTGAGTGTGAATCTGAGGATTTCAAAGATGATCAAACAGACCGGAATGAATTCCTTTCTGATGCAATGATAGCAGAAATGGAAGCCAGCATATATGGTTTGCAGATAATAAAGAATGCTGATCTTGAAGATCTTATGGAGTTAGGATCTGGTACTTATGGAACTGTTTACCATGGAAAATGGCGGGGAACAGATGTTGCTATTAAGAGAATTAAAAAGAGCTGCTTTGCAGGGAGGTCTTCTGAGCAAGAACGGTTGGCAAAAGATTTCTGGAGAGAGGCACAGATACTCTCAAATCTTCACCATCCCAACGTTGTTGCATTTTATGGAATAGTTCCAGATGGGGCTGGTGGAACCTTAGCAACTGTAACAGAGTATATGGTTAATGGTTCCCTTAGGCATGTCCTTGTTAAGAACCACAGATTACTAGATCGTCGTAAAAAGCTAATAATTGCCATGGATGCAGCTTTTGGTATGGAATATTTGCACTCAAAAAATATTGTCCATTTTGATTTAAAATGTGACAATTTGCTTGTCAATCTAAGGGATCCACAACGACCAATATGTAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGTAATACCCTTGTATCTGGAGGTGTGCGAGGAACCCTTCCATGGATGGCACCAGAATTGTTGAATGGTAATAGCAGTCGAGTTTCTGAAAAGGTTGATGTTTTCTCATTCGGCATCTCAATGTGGGAGTTATGGACAGGGGAGGAACCTTATGCAGATATGCATTGTGGTGCCATTATTGGGGGTATTGTAAAGAACACTCTTCGACCACCTGTTCCGGAAAGCTGTGATTCTGAGTGGAGGAAGCTTATGGAAGAGTGTTGGTCACTTGACCCTGAAAGGCGGCCATCATTCACAGAGATAACTAGCAGGTTAAGATCTATGTCTATGTCCCTTCAAGCTAGGGGGAATTATCAGGCATGGCAAGTGAGACCTAGTGCTCCTTGA 3894 0.4129 MAQNKTGKLIGAKTGKDSGSFPQYSQPELPCVGSNAGHNVHNLPIQAGEEFSVNYGHGGVAAGRVPASPDISRNRENRFGLNGENGHVRYEDLTNILGLRRMDSETSSEIGDFVSTKQPAHEMENGARVNISSKIQKGDGDRGHALRKAVCESIGDQPGIGSAVPVPHLHRKETSQSSGFLGSGILDDSLSGKMKFLCSFGGKILPRPGDGKLRYVGGFTHIISIRKDISWEELVKKTLGICTQPHTIKYQLPGEDLDSLISVSSDEDLQNMIEEYHGIENHEGSQKLRIFLVPLGESEETPSTDANTVEQNNPDYQYVVALNGIGEPSPRKNIAGQSLTNEASQSGTTFNFTPSFQRTPPDVSSPLDLRDGINTSNPDGILNDSMYMRESFPISPTAVQVAGSGTGYVQFLGNNSCQGSVESSTSFFTAQLHPENSGISTADCRYPQQVAVSLINDRHHPGDIGQPTKLNGKYFDNYNSRKELMTPIYVNQSDGYSDEGFGESSLPKDRKFCSGNPISYLNDPICQQAESYGITDSPHGMPHAFSDSQLHESGARSGYCSQEGIGQSFSLNLEKAQLSSLLVSRGSQANLMEGQNDSVLHHPQVQRKVPKVGLAEQHRQQDLSSSSPYSESLGVNGPIHKDSIFTESRYLVSQNDLNGSSSVEKDIQEQSVKLGRMKIIEEKNPIPRKDSKVYELESTVVDTGAVTELHLLDSLPTSNLNAKINMQNNWELSSEERHPSSSGMMGLSLHSFGDKTPSNLLPISQKTGDGKNCALAEGLNGEQGNDFLLTGNFDLNAPILKCEEISCDKIAVRDHMFKLSIDPDSQTSAQIQPSLNEIAAGFHDTQTVNSESLYPAINLPVNGLDNPSKKIYFEKAPFADDLFTRTDKIDQFIHEHTASGQSKVDDIIPQSKNLERCQDANRVEPFLIIDDLTCLVPPFIESSSVGTPHILHEVGRDLSPSNTEAGSIIPECESEDFKDDQTDRNEFLSDAMIAEMEASIYGLQIIKNADLEDLMELGSGTYGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGAGGTLATVTEYMVNGSLRHVLVKNHRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELWTGEEPYADMHCGAIIGGIVKNTLRPPVPESCDSEWRKLMEECWSLDPERRPSFTEITSRLRSMSMSLQARGNYQAWQVRPSAP* 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2129 1297 PRINTS Tyrosine kinase catalytic domain signature 1093 1106 IPR001245 GO:0004672|GO:0006468
Lja1g2129 1297 PRINTS Tyrosine kinase catalytic domain signature 1201 1223 IPR001245 GO:0004672|GO:0006468
Lja1g2129 1297 PRINTS Tyrosine kinase catalytic domain signature 1245 1267 IPR001245 GO:0004672|GO:0006468
Lja1g2129 1297 PRINTS Tyrosine kinase catalytic domain signature 1130 1148 IPR001245 GO:0004672|GO:0006468
Lja1g2129 1297 MobiDBLite consensus disorder prediction 344 362 - -
Lja1g2129 1297 Gene3D Transferase(Phosphotransferase) domain 1 1099 1293 - -
Lja1g2129 1297 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g2129 1297 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 97 1290 - -
Lja1g2129 1297 CDD PB1_UP2 197 292 - -
Lja1g2129 1297 SMART PB1_new 208 295 IPR000270 GO:0005515
Lja1g2129 1297 SUPERFAMILY Protein kinase-like (PK-like) 1000 1273 IPR011009 -
Lja1g2129 1297 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1136 1148 IPR008271 GO:0004672|GO:0006468
Lja1g2129 1297 SUPERFAMILY CAD & PB1 domains 210 296 - -
Lja1g2129 1297 SMART serkin_6 1011 1280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2129 1297 Gene3D - 212 294 - -
Lja1g2129 1297 Gene3D Phosphorylase Kinase; domain 1 1004 1098 - -
Lja1g2129 1297 ProSiteProfiles Protein kinase domain profile. 1011 1281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2129 1297 CDD STKc_MAP3K-like 1017 1274 - -
Lja1g2129 1297 Pfam PB1 domain 210 294 IPR000270 GO:0005515
Lja1g2129 1297 Pfam Protein tyrosine and serine/threonine kinase 1015 1274 IPR001245 GO:0004672|GO:0006468
Lja1g2129 1297 ProSitePatterns Protein kinases ATP-binding region signature. 1017 1042 IPR017441 GO:0005524
Lja1g2129 1297 MobiDBLite consensus disorder prediction 344 373 - -
Lja1g2129 1297 MobiDBLite consensus disorder prediction 618 633 - -
Lja1g2129 1297 MobiDBLite consensus disorder prediction 614 635 - -
Lja1g2129 1297 PANTHER SERINE-THREONINE PROTEIN KINASE 97 1290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2129 Lja-Chr1 24746726 24757185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2129 190 325 MAP Kinase Kinase Kinase AT1G16270 60.000 8.37e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Lja1g2129 PK_Tyr_Ser-Thr 2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2129 - - aprc:113862751 1765.36