Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2128 ATGAGACATTCTCAAAGGCTTGATAATAAGAGCAATGGCGTTCACTTTTTCAAGATTATTCTTGAAAGAAGCCTTCAAAGTGGAGAACTGATGGTGCCCAAAAGTTTTGTGAAGAATCACTGGCAAGGAATATCGACCTCTGTTTCTCTAATCCTTCCAAACAAGACTAAATGGAAAGTTTATTGGATGAAACGTGACGGTGATGTTTATTTTCACAATGGTTGGAAAGAATTCGCAGAATACATATCTTTGGAAGTGGCACAGTTTGTGGTGTTTCAATATGAAGGAAAATCCCGGTTCAATGTGATTGTGTTTGGCAAGAGTGGCATAGAAATAAAATACCCTTCCAAAGATAACAATACACTTGAAGAATGTGAAGAGGTTCATGAAAGTGATCTTGTTGCGGAGGGTAAAAGGGGAAAACCCAAACCTGCATCACCACCTTATAAGAAGATGAAAACAAGTCCAAAAGAAGAAGAGCATCCAAGTTTTTACTATGCTAAGCATAGCAACAGTGGAAGTGGCAATGAACTTAAGGAGAGAAGTAGAGCTCTTGTTGAAAAATTAAAGCTTAAACACTGTGACAGTCAAACCTTCGTACAAACAATCCACAAATCATACATTGGGAGAGATCTTCTGATCATTCCAAACGACTTTTATAACCTGAATCTGTACAAGATGGAAGGACAAATGGCTAGACTTTTTGTTAACAAGGAGAGAACTTGGGATGTGGAGTTAAAGCTCTATTCCGGTGGTCAAATCATATTTGGACGTGGTTGGAGGACATTTTTGTGTGACAATAATTTGAAATTGGGTGATGTTTGTGCTTTTGTGCTAAACAAATCCAATGGAGTTTTATTTCAAGTTTTTATTTATCCTCTCCACGAGTACCCATGCCATCTCCCTTTTCAAGAAGGGCTTTCTCAAAGGCCTTCATCTCTCAAAATCCCTGATATTATTAAAGACAAAAGCAGATTAATGTCAGAAGATGGTTTCGACATCCACATCAAACCTTCAATGAACGGGCAGGCGGTATGA 1038 0.3825 MRHSQRLDNKSNGVHFFKIILERSLQSGELMVPKSFVKNHWQGISTSVSLILPNKTKWKVYWMKRDGDVYFHNGWKEFAEYISLEVAQFVVFQYEGKSRFNVIVFGKSGIEIKYPSKDNNTLEECEEVHESDLVAEGKRGKPKPASPPYKKMKTSPKEEEHPSFYYAKHSNSGSGNELKERSRALVEKLKLKHCDSQTFVQTIHKSYIGRDLLIIPNDFYNLNLYKMEGQMARLFVNKERTWDVELKLYSGGQIIFGRGWRTFLCDNNLKLGDVCAFVLNKSNGVLFQVFIYPLHEYPCHLPFQEGLSQRPSSLKIPDIIKDKSRLMSEDGFDIHIKPSMNGQAV* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2128 345 SMART B3_2 16 108 IPR003340 GO:0003677
Lja1g2128 345 SMART B3_2 199 293 IPR003340 GO:0003677
Lja1g2128 345 ProSiteProfiles B3 DNA-binding domain profile. 198 293 IPR003340 GO:0003677
Lja1g2128 345 SUPERFAMILY DNA-binding pseudobarrel domain 197 292 IPR015300 -
Lja1g2128 345 Pfam B3 DNA binding domain 199 284 IPR003340 GO:0003677
Lja1g2128 345 Pfam B3 DNA binding domain 17 104 IPR003340 GO:0003677
Lja1g2128 345 MobiDBLite consensus disorder prediction 133 160 - -
Lja1g2128 345 PANTHER B3 DOMAIN-CONTAINING 9 292 - -
Lja1g2128 345 CDD B3_DNA 15 105 IPR003340 GO:0003677
Lja1g2128 345 Gene3D - 177 297 IPR015300 -
Lja1g2128 345 SUPERFAMILY DNA-binding pseudobarrel domain 12 109 IPR015300 -
Lja1g2128 345 Gene3D - 8 109 IPR015300 -
Lja1g2128 345 CDD B3_DNA 199 293 IPR003340 GO:0003677
Lja1g2128 345 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Lja1g2128 345 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2128 Lja-Chr1 24741654 24744763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2128 16 296 B3 DNA Binding Superfamily AT3G18990 25.146 2.79e-23 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g2128 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2128 - - lang:109332968 288.115