Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2119 ATGGCTTCAAGACCCCAACTGGCCAGAGGTAATGCAATTGTTGCAGCAGAGGGAAGGAAACGCAGAGCACTTAGTGATATAGGAAACATAAGAGGAGTTGAGATCAAGACCACAAAGAGTTTCTTTAATAAAACACTTCCTAATGCACAAGCTGCAGCAGCTGTTCAAAATAACAAGAAACATGATTGTGCTAATGTGGATGGAAGAAAGGCTAAGAAACCCAAGGAACATATTGTTGAGGACATTGATGCCGGTGACACTAACAACGAGCTTGCTGCTGTGGAATATGTTGAAGACATGTACAAGTTCTATAAGAGGGTTGAGAATGAGAGGCGTCCCTATGCCTCATACATGGAGTCACAGCCTGAGATAAATGAGAAAATGAGGGCTACCCTTGTTGATTGGCTGGTACTTGTTCACACCAAGTATGAGTTTTCACTTGAAACCCTCTACCTCACCATCAACATAATTGATCGGTTCCTTGCACTCCAGATTGTGCCAAGGAATGAACTGCAATTGGTTGGCATCACTGCCATGCTCATGGCATCGAAGTATGAAGAAATTTTGGCCCCTATGGTTAATGACCTTGTCTTGCTCTCAGACGGAGCTTATTGTCATCAACAGATACTTGAGATGGAGAAAATCATACTGAGAAAGCTGGAATGGAACTTGAGTGTGCCTACACCATTTATTTTCCTAGTTCGTTTCATCAAGGCTTCCTCAGTTCCGGATCAAGATGAGGCGGTGCAAAACATGGCCTGTTTTCTTTGTGAGTTGGGGATGATGCATTATGCTACCTTGAAGTATTGCCCATCAATGATTGCTGCCTCAGCAGTGTTTGCAGCTAGGCGCACTCTCAACAAGAGCCGTGCTTGGAATCACACACTTAAGCTGCACACTGGTTACTCACAACAACAGCTTATGGATTGTGCTACACTCTTGGTGAGCTTTCATTGCATGGGTGGGAATGGGAAGCTCAAGGTTGTGTACAATAAGTACTGCGAACCTCAAAGAGGAGCTGTTGCGCGGCTTCCACCAGCTAAAAATCTACTGACTTTAGAGGAGAGGATAGAGAGGATACAAATTGATGAGAACATAGAAAAGAAAAAAAGGAAGATGTTGTAA 1125 0.4364 MASRPQLARGNAIVAAEGRKRRALSDIGNIRGVEIKTTKSFFNKTLPNAQAAAAVQNNKKHDCANVDGRKAKKPKEHIVEDIDAGDTNNELAAVEYVEDMYKFYKRVENERRPYASYMESQPEINEKMRATLVDWLVLVHTKYEFSLETLYLTINIIDRFLALQIVPRNELQLVGITAMLMASKYEEILAPMVNDLVLLSDGAYCHQQILEMEKIILRKLEWNLSVPTPFIFLVRFIKASSVPDQDEAVQNMACFLCELGMMHYATLKYCPSMIAASAVFAARRTLNKSRAWNHTLKLHTGYSQQQLMDCATLLVSFHCMGGNGKLKVVYNKYCEPQRGAVARLPPAKNLLTLEERIERIQIDENIEKKKRKML* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2119 374 CDD CYCLIN 225 315 IPR013763 -
Lja1g2119 374 PANTHER CYCLINS 73 357 IPR039361 -
Lja1g2119 374 ProSitePatterns Cyclins signature. 129 160 IPR006671 -
Lja1g2119 374 CDD CYCLIN 128 217 IPR013763 -
Lja1g2119 374 PIRSF Cyclin_A_B_D_E 38 359 IPR039361 -
Lja1g2119 374 PIRSF Cyclin_A_B_D_E 2 75 IPR039361 -
Lja1g2119 374 Gene3D - 99 342 - -
Lja1g2119 374 Gene3D - 113 225 - -
Lja1g2119 374 SMART cyclin_7 231 316 IPR013763 -
Lja1g2119 374 SMART cyclin_7 134 218 IPR013763 -
Lja1g2119 374 Pfam Cyclin, C-terminal domain 227 346 IPR004367 -
Lja1g2119 374 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 73 357 - -
Lja1g2119 374 Pfam Cyclin, N-terminal domain 99 225 IPR006671 -
Lja1g2119 374 SUPERFAMILY Cyclin-like 226 348 IPR036915 -
Lja1g2119 374 SMART Cyclin_C_2 227 347 IPR004367 -
Lja1g2119 374 SUPERFAMILY Cyclin-like 88 224 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2119 Lja-Chr1 24653546 24655554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2119 72 355 Core Cell Cycle Gene Families AT4G37490 56.207 1.10e-104 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2119 K21777 - mtr:MTR_7g089080 402.519