Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2114 ATGAGCTGCTTTTCATGTTTTTCTTCCCACGATAAAAAGGTAGCAAAGAGGCCTAATAATAACAATGGAAGGAGGATACAACCTCCTGCTGTTCAATCTCCTAAGGGAGCAGCCCCACCTCAGCCAGAGAATCATTATCACAAGGCAAGGGCAAAGCCACCAACAGATCCAAAAATAAACAGAGAGGCCAATAAAGATACTGGGAACAATAACAACAACATTGCTGCCCAAACGTTCACCTTCAGGGAATTGGCTGTTACTACAAAGAACTTCAGGCAGGAGAATCTAATAGGTGAAGGTGGATTTGGGAGGGTTTATAGAGGAAAACTTGAAAAAACAAACCAGGAAGTAGCTGTGAAGCAACTTGACAGGAATGGATTGCAAGGGAACAGAGAATTTCTTGTTGAAGTGTTAATGCTGAGCCTCTTGCACAATCAAAATCTAGTGAATTTAATTGGATATTGTGCTGATGGAGATCAGAGGTTGTTGGTTTATGAGTACATGCCTTTGGGATCTCTTGAGGACCACCTACTTGATCTTCATCCACAACAAAAGCCTCTAGATTGGTTCACGAGAATGAAAATAGCTTTGGATGCTGCAAAAGGTCTAGAATATTTGCATGACAAGGCGAATCCCCCGGTGATCTACCGCGACTTAAAGTCTTCCAACATCTTGCTGGACAATGATTTCAATGCAAAGCTCTCTGATTTTGGACTAGCGAAGCTGGGACCAACAGGGGACAAGTCTCATGTGTCTTCAAGAGTAATGGGAACTTATGGATATTGTGCCCCTGAGTATCAAAGAACTGGACAGCTCACTGTGAAATCAGATGTGTACAGCTTTGGAGTAGTTTTGCTCGAATTGATCACAGGAAGGAGAGCCATTGACAACACAAGATCAGCAAGGGAACAGAACCTAGTTTCTTGGGCATATCCAGTATTCAGGGACCCTCATAGATACCCAGAATTAGCAGATCCCATTCTTGAAGGAAACTTTCCAATGAGATCACTACACCAAGCAGTGGCAGTAGCAGCCATGTGCCTGAATGAGGAGCCCTCAGTGAGGCCCTTGATCAGCGACGTCGTGACTGCTCTTAGCTTCCTTGGGAGAACTCCAGGGAGCCAAGACCCTGTAAGAATCGCACCTGTTGATATGCCCTCCCCAAAACATGAGCCAGAGCAACTACAAGACGACACTACTAGTGCCACATTGAATCTTCTTGACAATGATAGTGCCATGGAACGCCAAAAAGCAGTTGATGAAGCCATTGAATGGGGTTCAAATTCTAGGAACAATAAACCAGCGCGTCGTGACAGTTCTTCCTCTTTGTAA 1332 0.4437 MSCFSCFSSHDKKVAKRPNNNNGRRIQPPAVQSPKGAAPPQPENHYHKARAKPPTDPKINREANKDTGNNNNNIAAQTFTFRELAVTTKNFRQENLIGEGGFGRVYRGKLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHNQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLHPQQKPLDWFTRMKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDNDFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGRRAIDNTRSAREQNLVSWAYPVFRDPHRYPELADPILEGNFPMRSLHQAVAVAAMCLNEEPSVRPLISDVVTALSFLGRTPGSQDPVRIAPVDMPSPKHEPEQLQDDTTSATLNLLDNDSAMERQKAVDEAIEWGSNSRNNKPARRDSSSSL* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2114 443 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Lja1g2114 443 SUPERFAMILY Protein kinase-like (PK-like) 77 399 IPR011009 -
Lja1g2114 443 CDD STKc_IRAK 97 365 - -
Lja1g2114 443 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL26-RELATED 2 435 - -
Lja1g2114 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Lja1g2114 443 MobiDBLite consensus disorder prediction 425 443 - -
Lja1g2114 443 SMART serkin_6 91 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2114 443 Gene3D Phosphorylase Kinase; domain 1 60 167 - -
Lja1g2114 443 PANTHER OS07G0668900 PROTEIN 2 435 - -
Lja1g2114 443 ProSiteProfiles Protein kinase domain profile. 91 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2114 443 MobiDBLite consensus disorder prediction 45 63 - -
Lja1g2114 443 MobiDBLite consensus disorder prediction 375 400 - -
Lja1g2114 443 Pfam Protein kinase domain 92 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2114 443 MobiDBLite consensus disorder prediction 1 74 - -
Lja1g2114 443 Gene3D Transferase(Phosphotransferase) domain 1 168 375 - -
Lja1g2114 443 MobiDBLite consensus disorder prediction 421 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2114 Lja-Chr1 24558386 24561403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2114 1 430 Glycoside Hydrolase AT3G07070 66.282 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lja1g2114 Pkinase 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2114 - - gmx:100786405 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2114 1 24558386 24561403 Lja1g2114 1 24558386 24561403 ECH
Lja1g2114 1 24558386 24561403 Lja3g0780 3 7902909 7907297 ECH
Lja1g2114 1 24558386 24561403 Lja3g2839 3 43899949 43903635 ECH