Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2109 ATGAAGCCCACTTTGGCTCAGGCTCAGAGTAATTGGGAAGCTGATAAAATGCTTGACGTTTATATTCATGACTATTTTGTGAAAAGAAAATTACATAATGCTGCTAAAGCATTTATGACAGAAGGAAAAGTTTCCACAGACCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCGAGGACAAATGAGAAACATTCGGAGGCTGCCGCATCTTACATTGAGACCCAGCAAATAAAGGCCAGAGAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAGCGCAATGCACAGTTACAGCGAAGAGATCCTAATCATCCCGCACTTGGTGGATCCTTGAATGCCATGAACTCTGAAGGAATGTTGGGCCAGCCGCCAGCAAGTGTGTTAGCCATGAAAATGTATGAAGAACAAATGAAACATCCCCAATCAATGGATTCAGACCCATCTCCAACTCTTAGTGATGCGAATAGGATGGCCCTTCTCAAATCAGCTACAAGTCATCAAGGCCAGTTGGTTCATGGTAATTCAGGGAATATATCCACTGCCTTGCAGCAAATTCAGGCACGGGCTCCTTTGACTTCTGACATCAAAGGAGAAGTTAACTTAGGTTCCAGTCCGAAGAGTTTGGCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCCGGGTTAGGCAGTGCAGGATTAAATCAAGGAGTTACAAGTCTTCCATTAAAAGGCTGGCCTCTAACTGGAATTGATCAACTAAGACCAAATATGGGTATACAAGTTCAGAAACCTAATTTGACAACCCAAAATCAATTCATTTTGTCATCACAACAACAACAGGGCTTGGCACAAGCTCAGGCACAAAACAACCTTGGAAGTTCCAATTATTTGGATATGGATCCGCGTAGACTTTCTGCTCCTCCACGAGGTAGCGTAAATGCAAAGGATGGTCACTCTACCCGGAATGATGGATCCATGAGTTCCCAAATGCAATCAGGTTCACCTAAGATGAAGATGGCCCAATCACAACATTCATTATCTCAACAGCAGGAGCAGCTGCAGCAGAATAACAGGAAAAGAAAACAGCCTTCTTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACGGCTGGTCCTTCGCCTAGTTCACCAGCATCAACACACACACCTGGTGATGGATTAAATACAGCAAGCAGCATGCAGCATGTTAACAGTGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCTTCAAATTTGCTGGATGACATTGAGCGACTTGGAGATGTTGGTGCTTTAGAAGATAATGTGGAATCCTTTCTATCCAATGATGGAGGAGATGGTGGCAATCTTTATGGAACAATAAAACCAAGTCCTGCTGAGCAACAAAAAGAGTCTTCAAAAGGTTTCACCTTTGCTGAATTTGGTTGCATAAGAACAAGAAATAGCACAGTTACTTGCTGTCACTTTTCATCAGACGGAAAGATGCTCGCTAGTGCTGGGGATGACAAGAAGGTTGTCCTCTGGAACATGGACACTTTACAGACAGAGAGCACTCCTGAACAACACAAATCAGTTATTTCTGATGTCCGTTTTAGACCAAATTCCTCTCAGTTGGCGACCGCCTCAATTGATAAATCTGTGCGGTTATGGGACGCAGCCAACCCAACCTATTGTGTACAAGAATATAATGGGCACAGTTCAGCTATTATGTCCCTTGATTTCCACCCGAAGAAGACTGATATCTTCTGCTTCTGTGATAGTGCAAATGAAATTCGGTATTGGAACATTACTTCATCCTCCTGCACCCGTGTATCTAAGGGAGGTAGTTCACAAGTGAGATTTCAGCCTAGAATTGGACAAGTACTAGCAGCAGCTTCTGATAAAGTAGTGTCGATATTTGATGTCGAAAGTGACAGACAAATTTATACACTCCAGGGTCATCCTGAACCAGTAAACTCTATTTGCTGGGATGTGAATGGAGATTTCTTGGCATCTGTGAGTCCAAATTTGGTGAAGATTTGGAGTTTGACCTCAGGAGAATGCATTCAGGAGCTCAGCTCCAGTGGCAACCAGTTTTATTCCTGTGTTTTTCACCCGAGTTATTCGACTTTGCTAGTGATTGGAGGTTTTTCGTCCTTGGAGCTGTGGAACATGGCTGATAACAAAAGCATGACAATATCCGCGCACGAGAGTGTAATATCTGCTTTGGCTCAGTCTCCAGTAACTGGAATGGTTGCCTCTGCAAGTCATGACAACTCTGTAAAATTGTGGAAATAA 2340 0.4316 MKPTLAQAQSNWEADKMLDVYIHDYFVKRKLHNAAKAFMTEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAASYIETQQIKAREQLQMQQLQLMQQRNAQLQRRDPNHPALGGSLNAMNSEGMLGQPPASVLAMKMYEEQMKHPQSMDSDPSPTLSDANRMALLKSATSHQGQLVHGNSGNISTALQQIQARAPLTSDIKGEVNLGSSPKSLAMDTSVYRQAILQSKSGLGSAGLNQGVTSLPLKGWPLTGIDQLRPNMGIQVQKPNLTTQNQFILSSQQQQGLAQAQAQNNLGSSNYLDMDPRRLSAPPRGSVNAKDGHSTRNDGSMSSQMQSGSPKMKMAQSQHSLSQQQEQLQQNNRKRKQPSSSGAANSTGTGNTAGPSPSSPASTHTPGDGLNTASSMQHVNSVQKSMMMYGTEATGGLASSSNLLDDIERLGDVGALEDNVESFLSNDGGDGGNLYGTIKPSPAEQQKESSKGFTFAEFGCIRTRNSTVTCCHFSSDGKMLASAGDDKKVVLWNMDTLQTESTPEQHKSVISDVRFRPNSSQLATASIDKSVRLWDAANPTYCVQEYNGHSSAIMSLDFHPKKTDIFCFCDSANEIRYWNITSSSCTRVSKGGSSQVRFQPRIGQVLAAASDKVVSIFDVESDRQIYTLQGHPEPVNSICWDVNGDFLASVSPNLVKIWSLTSGECIQELSSSGNQFYSCVFHPSYSTLLVIGGFSSLELWNMADNKSMTISAHESVISALAQSPVTGMVASASHDNSVKLWK* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2109 779 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 498 533 - -
Lja1g2109 779 Coils Coil 351 371 - -
Lja1g2109 779 Pfam WD domain, G-beta repeat 538 572 IPR001680 GO:0005515
Lja1g2109 779 Pfam WD domain, G-beta repeat 503 530 IPR001680 GO:0005515
Lja1g2109 779 Pfam WD domain, G-beta repeat 745 779 IPR001680 GO:0005515
Lja1g2109 779 Pfam WD domain, G-beta repeat 661 696 IPR001680 GO:0005515
Lja1g2109 779 ProSiteProfiles Trp-Asp (WD) repeats profile. 540 572 IPR001680 GO:0005515
Lja1g2109 779 ProSitePatterns Trp-Asp (WD) repeats signature. 517 531 IPR019775 -
Lja1g2109 779 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 779 IPR044716 GO:0003714
Lja1g2109 779 PRINTS G protein beta WD-40 repeat signature 517 531 IPR020472 -
Lja1g2109 779 PRINTS G protein beta WD-40 repeat signature 559 573 IPR020472 -
Lja1g2109 779 PRINTS G protein beta WD-40 repeat signature 766 779 IPR020472 -
Lja1g2109 779 Coils Coil 94 114 - -
Lja1g2109 779 MobiDBLite consensus disorder prediction 304 411 - -
Lja1g2109 779 MobiDBLite consensus disorder prediction 327 411 - -
Lja1g2109 779 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 779 - -
Lja1g2109 779 Gene3D - 480 631 IPR015943 GO:0005515
Lja1g2109 779 Pfam LisH 16 42 IPR006594 GO:0005515
Lja1g2109 779 SUPERFAMILY WD40 repeat-like 496 779 IPR036322 GO:0005515
Lja1g2109 779 SMART Lish 14 46 IPR006594 GO:0005515
Lja1g2109 779 Gene3D - 632 779 IPR015943 GO:0005515
Lja1g2109 779 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Lja1g2109 779 SMART WD40_4 658 696 IPR001680 GO:0005515
Lja1g2109 779 SMART WD40_4 576 616 IPR001680 GO:0005515
Lja1g2109 779 SMART WD40_4 699 738 IPR001680 GO:0005515
Lja1g2109 779 SMART WD40_4 740 779 IPR001680 GO:0005515
Lja1g2109 779 SMART WD40_4 619 655 IPR001680 GO:0005515
Lja1g2109 779 SMART WD40_4 491 530 IPR001680 GO:0005515
Lja1g2109 779 SMART WD40_4 533 572 IPR001680 GO:0005515
Lja1g2109 779 ProSiteProfiles Trp-Asp (WD) repeats profile. 498 539 IPR001680 GO:0005515
Lja1g2109 779 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 705 IPR001680 GO:0005515
Lja1g2109 779 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 540 572 - -
Lja1g2109 779 MobiDBLite consensus disorder prediction 462 486 - -
Lja1g2109 779 CDD WD40 505 779 - -
Lja1g2109 779 ProSiteProfiles Trp-Asp (WD) repeats profile. 583 625 IPR001680 GO:0005515
Lja1g2109 779 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 747 779 - -
Lja1g2109 779 ProSiteProfiles Trp-Asp (WD) repeats profile. 747 779 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2109 Lja-Chr1 24498973 24507269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2109 578 778 Miscellaneous Gene Families AT5G08390 25.243 1.19e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lja1g2109 WD40 0.012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2109 - - gmx:100799686 1200.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2109 1 24498973 24507269 Lja1g2109 1 24498973 24507269 ECH