Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g2108 | ATGGAGAACAGCGAATTCAAAGATGAGATAATGGACATTGACCATGGAGAAACCCCTGATTCCTTTTGTTGCTCCGTTTGCCTGGATCTATTATACAAGCCCATTGTACTATCTTGTGGTCACATGTGCTGTTTCTGGTGTGTCTATAAATCAATGAATTGTCTACGAGAGTCTCAGTGTCCAATATGTAGGCACCAATACTATCACTTTCCAACAGTCTGCCAAATGCTTCACTTTTTGCTTCTTAAGGTCTATCCTGTTGCGTACACCAGAAGGATAAATCAAACTCTTGAGGAAGAAAAGAAATCGGGCTTCTATTCCCCTGAATTTGATCCTGATACATGTGAATCCCAAGCTAAATTTGGTCATTCTGGTAGCCCTTCTTCCTCCTCTATTACACATCTCGTGCCCAGCTTATGCAACGTGGGAACTTCTGAAGGTATGGAACAATCAAAGTCCACCAACCATGAAGGAGACGATGGCACCATCCATTCTAAACGCTCTTCCATTGGAGAAGCTGAAATTATTGGGACTCCTATTAAAGGACAAAAATCGTCTCAGGATGAGCTTTGCCCACCACAGAAATTGTCAGTTGCAGATGTGATGTGTATAATGTGCAAGCAACTTCTCTGTCAACCTGTAGTTCTTAATTGTGGCCATGTATACTGTGAAACTTGTGTCATCAAGTTAGCTGATGAGATGCTTAGATGCCAAGTTTGCCAAAGTCCGCATCCAAGAGGATTTCCAAAAGTGTGTTTGGAGTTTGATCAGTTTCTGGAAGAACAATTTCCTGAAGAATATAAATGGCGAAGAGATGCTATTGAACTAAGGCAGATCAAAGTGAAACCAGAGACCCCTTCTTCTTGTTCATCAAACAACCATAACAAAGGAGAAAAAATCGAATTTTGGTCTGATCCTGAGTCAAAAGTTCATATTGGAGTTGGTTGTGATTTTTGCGGGATGTATCCTATCATTGGAGATAGATATAAATGCGAGGACTGTAAGGAGAAGATGGGTTTTGATCTTTGTGGTGATTGCTATGACACCCGTTCCAAGCTTCCAGGCCGATTTAATCAACAACACACCTCAGAGCACAGATTCAAGCTTGTACAACCCAATGTTATTCGTAACATAATGTTGAGGCTGGTCACGGGACAGTTAGGGGACAGTTCCATTGTCAATGAGTCTTTAGAAAATCTGGAATTTCCATCTGAAGCCTCCGGTTTGTTTGATGATGGAGAAGATAACCAGAATGATCCTGAAGCTACCAGTTGA | 1275 | 0.4141 | MENSEFKDEIMDIDHGETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQCPICRHQYYHFPTVCQMLHFLLLKVYPVAYTRRINQTLEEEKKSGFYSPEFDPDTCESQAKFGHSGSPSSSSITHLVPSLCNVGTSEGMEQSKSTNHEGDDGTIHSKRSSIGEAEIIGTPIKGQKSSQDELCPPQKLSVADVMCIMCKQLLCQPVVLNCGHVYCETCVIKLADEMLRCQVCQSPHPRGFPKVCLEFDQFLEEQFPEEYKWRRDAIELRQIKVKPETPSSCSSNNHNKGEKIEFWSDPESKVHIGVGCDFCGMYPIIGDRYKCEDCKEKMGFDLCGDCYDTRSKLPGRFNQQHTSEHRFKLVQPNVIRNIMLRLVTGQLGDSSIVNESLENLEFPSEASGLFDDGEDNQNDPEATS* | 425 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g2108 | 424 | ProSiteProfiles | Zinc finger RING-type profile. | 203 | 241 | IPR001841 | - | |
| Lja1g2108 | 424 | Gene3D | - | 304 | 370 | IPR043145 | - | |
| Lja1g2108 | 424 | MobiDBLite | consensus disorder prediction | 144 | 165 | - | - | |
| Lja1g2108 | 424 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE | 11 | 419 | - | - | |
| Lja1g2108 | 424 | ProSitePatterns | Zinc finger RING-type signature. | 218 | 227 | IPR017907 | - | |
| Lja1g2108 | 424 | SUPERFAMILY | RING/U-box | 18 | 74 | - | - | |
| Lja1g2108 | 424 | SUPERFAMILY | RING/U-box | 200 | 261 | - | - | |
| Lja1g2108 | 424 | ProSiteProfiles | Zinc finger ZZ-type profile. | 311 | 375 | IPR000433 | GO:0008270 | |
| Lja1g2108 | 424 | MobiDBLite | consensus disorder prediction | 404 | 424 | - | - | |
| Lja1g2108 | 424 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 288 | IPR013083 | - | |
| Lja1g2108 | 424 | Pfam | Zinc finger, C3HC4 type (RING finger) | 22 | 66 | - | - | |
| Lja1g2108 | 424 | SMART | ring_2 | 24 | 63 | IPR001841 | - | |
| Lja1g2108 | 424 | SMART | ring_2 | 203 | 240 | IPR001841 | - | |
| Lja1g2108 | 424 | Pfam | Zinc finger, ZZ type | 312 | 351 | IPR000433 | GO:0008270 | |
| Lja1g2108 | 424 | CDD | RING-HC | 24 | 63 | - | - | |
| Lja1g2108 | 424 | PANTHER | UNCHARACTERIZED | 11 | 419 | - | - | |
| Lja1g2108 | 424 | SUPERFAMILY | RING/U-box | 305 | 370 | - | - | |
| Lja1g2108 | 424 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 130 | IPR013083 | - | |
| Lja1g2108 | 424 | ProSiteProfiles | Zinc finger RING-type profile. | 24 | 64 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g2108 | Lja-Chr1 | 24488744 | 24496317 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja1g2108 | 14 | 64 | C3H Transcription Factor Family | AT1G74990 | 36.538 | 4.35e-07 | 47.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja1g2108 | - | - | gmx:100782681 | 658.292 |