Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g2105 | ATGGTTTCAGGTTCCGGCGTGTGCGCGAAGAGGGTGGTGGTCGACGCTCGCCACCACATGCTCGGCCGTCTCGCTTCCATCGTCGCCAAGGAGCTTCTCAACGGTCAGAAGGTCGTCGTCGTCCGCTGCGAGGAGATCTGCATCTCCGGCGGCCTCGTCAGGCAGAAGATGAAGTACATGCGCTTCCTCCGCAAGCGCATGAACACCAAACCCTCTCATGGCCCCATCCATTTCCGTGCTCCTTCCAAGATCTTCTGGCGCACCCTTCGCGGTATGATTCCGCATAAGACCAAGCGTGGTGAAGCTGCTCTTGCTCGATTGAAGGTGTACGAGGGCATTCCTCCTCCATATGACAAGATGAAGAGGATGGTTGTTCCTGATGCTCTCAAGGTTTTGAGGCTTCAGAAGGGGCACAAGCACTGCCTCCTTGGCAAATTGTCATCTGAGGTTGGATGGAACTACTATGACACCATCAAGGAGCTCGAGAAGAAGAGAAAGGATAAGGCACAGGTGGTTTATGAGAGGAAGAAGCAGCTCACCAAGTTGAGGGCGAAAGCTGAGAAGATCGCTGATGAAAAACTCGGTTCCCAACTTGAAATCCTTGCTCCCGTTAAGTACTGA | 621 | 0.5362 | MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTLRGMIPHKTKRGEAALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKHCLLGKLSSEVGWNYYDTIKELEKKRKDKAQVVYERKKQLTKLRAKAEKIADEKLGSQLEILAPVKY* | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g2105 | 206 | ProSitePatterns | Ribosomal protein L13 signature. | 89 | 112 | IPR023563 | GO:0003735|GO:0005840|GO:0006412 | |
| Lja1g2105 | 206 | PANTHER | 60S RIBOSOMAL PROTEIN L13A-4 | 1 | 206 | - | - | |
| Lja1g2105 | 206 | Hamap | 50S ribosomal protein L13 [rplM]. | 11 | 135 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
| Lja1g2105 | 206 | SUPERFAMILY | Ribosomal protein L13 | 12 | 154 | IPR036899 | GO:0003735|GO:0005840|GO:0006412 | |
| Lja1g2105 | 206 | CDD | Ribosomal_L13 | 12 | 113 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
| Lja1g2105 | 206 | Gene3D | Ribosomal protein L13 | 7 | 154 | IPR036899 | GO:0003735|GO:0005840|GO:0006412 | |
| Lja1g2105 | 206 | TIGRFAM | L13_A_E: ribosomal protein uL13 | 12 | 154 | IPR005755 | GO:0003735|GO:0006412|GO:0015934 | |
| Lja1g2105 | 206 | Gene3D | - | 156 | 206 | - | - | |
| Lja1g2105 | 206 | PANTHER | RIBOSOMAL PROTEIN L13 | 1 | 206 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
| Lja1g2105 | 206 | Pfam | Ribosomal protein L13 | 10 | 115 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g2105 | Lja-Chr1 | 24454569 | 24456052 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja1g2105 | 1 | 206 | Cytoplasmic Ribosomal Protein Gene Family | AT5G48760 | 87.864 | 3.21e-138 | 383 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja1g2105 | K02872 | - | gmx:100813340 | 392.504 |
Event-related genes