Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja1g2087 | ATGTCAGCTTCGGAGAGCAGCCGAGAGAAGCTAGCGGGCTTGACACTCGACGAAATTTTAGCCAACCAAAAGAGATTAGCCGCCACGCCACTGCCACCGAGCCTACCACCTCCTACCAAGAGCCGAACCCTTCTTGACATTATCAGAGAAGACGAGTCCACCAAAAAAGATCGCAGATCTTGGAAAGCATTCAAGGACAAGATTCGTCTGAAGCGCGCTGGCTCCGCTTGGACATCGTCAATTCACATTCCGACTTCTGATGTGCCCATCTCAAACCCAAACTCCAGGAACAACTTTGCCAATCTCGGCCGCCGCGACTCCGTACGATTCCAGACTTACCCGACCGACTACTCGGACATGTCAAATCAGTACAACGCTCACCAAGTAGAAGACCTCGATCCCACAGAGGACTCTGACTCTCCAGCTTCGGCGGCACCGACCACTAGACCCCAGTTCTCCCGCAAAGGATCCACCCGCTACGCCGTCGACCCCTCTTTCGACAACAATGTTGGCGGCGTTAGTCTCCGGCCGCAACTGTCGCGGCGGAACTCCACCAGCGTTCAAACGGAGCCGTTCCGACGAGGGCGGGTGGTGACATTTCGGGACAACATGGATGCTGACGAGGAGGTTGAGGAGTCGTACGACCGCCGCCCAGAAACTGGGCGGGCGTTGTCGGCGAGGGAGGCAGTGGTGGCGCAGGAGGCAGCAGAAGCAGCTGCTGCGGCAGAGGCGGAGGAGGAGGCGGGGAGGGGTCAGGTGACGATGTCGTTGATGGACTTGCTGGAAGAGACTGATAGGGAGATGGGGCTTGAAGGTTCAAGGTATATATTAAGTGATGATGATGAGGAAGATGATGACGAGGAAGGTGGGGTAGATGAGGATGAAGATGTTGTAGGTGGTGGTTCTATGGAGCACACTTGCTGCATTTGCATGGTGAGGCATAAAGGTGCTGCTTTGATGCCTTGTGGTCACACTTTCTGCCGGATGTGTTCGAGGGAGCTTATGGTCAGCAAGGGGAACTGCCCAATCTGCAACAATTTTATTTTAGAGATTCTTGACATTTTCTGA | 1068 | 0.5459 | MSASESSREKLAGLTLDEILANQKRLAATPLPPSLPPPTKSRTLLDIIREDESTKKDRRSWKAFKDKIRLKRAGSAWTSSIHIPTSDVPISNPNSRNNFANLGRRDSVRFQTYPTDYSDMSNQYNAHQVEDLDPTEDSDSPASAAPTTRPQFSRKGSTRYAVDPSFDNNVGGVSLRPQLSRRNSTSVQTEPFRRGRVVTFRDNMDADEEVEESYDRRPETGRALSAREAVVAQEAAEAAAAAEAEEEAGRGQVTMSLMDLLEETDREMGLEGSRYILSDDDEEDDDEEGGVDEDEDVVGGGSMEHTCCICMVRHKGAALMPCGHTFCRMCSRELMVSKGNCPICNNFILEILDIF* | 356 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja1g2087 | 355 | SMART | ring_2 | 307 | 344 | IPR001841 | - | |
Lja1g2087 | 355 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 279 | 355 | IPR013083 | - | |
Lja1g2087 | 355 | PANTHER | OS01G0917900 PROTEIN | 5 | 355 | - | - | |
Lja1g2087 | 355 | MobiDBLite | consensus disorder prediction | 130 | 194 | - | - | |
Lja1g2087 | 355 | MobiDBLite | consensus disorder prediction | 274 | 298 | - | - | |
Lja1g2087 | 355 | Pfam | Zinc finger, C3HC4 type (RING finger) | 304 | 348 | - | - | |
Lja1g2087 | 355 | MobiDBLite | consensus disorder prediction | 277 | 297 | - | - | |
Lja1g2087 | 355 | MobiDBLite | consensus disorder prediction | 171 | 192 | - | - | |
Lja1g2087 | 355 | SUPERFAMILY | RING/U-box | 306 | 351 | - | - | |
Lja1g2087 | 355 | CDD | RING-HC | 307 | 344 | - | - | |
Lja1g2087 | 355 | MobiDBLite | consensus disorder prediction | 140 | 155 | - | - | |
Lja1g2087 | 355 | ProSiteProfiles | Zinc finger RING-type profile. | 307 | 345 | IPR001841 | - | |
Lja1g2087 | 355 | PANTHER | OS01G0917900 PROTEIN | 5 | 355 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja1g2087 | Lja-Chr1 | 24152293 | 24153874 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja1g2087 | 1 | 355 | C3H Transcription Factor Family | AT3G07120 | 37.135 | 7.94e-59 | 192 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja1g2087 | - | - | gmx:100795449 | 417.927 |