Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2087 ATGTCAGCTTCGGAGAGCAGCCGAGAGAAGCTAGCGGGCTTGACACTCGACGAAATTTTAGCCAACCAAAAGAGATTAGCCGCCACGCCACTGCCACCGAGCCTACCACCTCCTACCAAGAGCCGAACCCTTCTTGACATTATCAGAGAAGACGAGTCCACCAAAAAAGATCGCAGATCTTGGAAAGCATTCAAGGACAAGATTCGTCTGAAGCGCGCTGGCTCCGCTTGGACATCGTCAATTCACATTCCGACTTCTGATGTGCCCATCTCAAACCCAAACTCCAGGAACAACTTTGCCAATCTCGGCCGCCGCGACTCCGTACGATTCCAGACTTACCCGACCGACTACTCGGACATGTCAAATCAGTACAACGCTCACCAAGTAGAAGACCTCGATCCCACAGAGGACTCTGACTCTCCAGCTTCGGCGGCACCGACCACTAGACCCCAGTTCTCCCGCAAAGGATCCACCCGCTACGCCGTCGACCCCTCTTTCGACAACAATGTTGGCGGCGTTAGTCTCCGGCCGCAACTGTCGCGGCGGAACTCCACCAGCGTTCAAACGGAGCCGTTCCGACGAGGGCGGGTGGTGACATTTCGGGACAACATGGATGCTGACGAGGAGGTTGAGGAGTCGTACGACCGCCGCCCAGAAACTGGGCGGGCGTTGTCGGCGAGGGAGGCAGTGGTGGCGCAGGAGGCAGCAGAAGCAGCTGCTGCGGCAGAGGCGGAGGAGGAGGCGGGGAGGGGTCAGGTGACGATGTCGTTGATGGACTTGCTGGAAGAGACTGATAGGGAGATGGGGCTTGAAGGTTCAAGGTATATATTAAGTGATGATGATGAGGAAGATGATGACGAGGAAGGTGGGGTAGATGAGGATGAAGATGTTGTAGGTGGTGGTTCTATGGAGCACACTTGCTGCATTTGCATGGTGAGGCATAAAGGTGCTGCTTTGATGCCTTGTGGTCACACTTTCTGCCGGATGTGTTCGAGGGAGCTTATGGTCAGCAAGGGGAACTGCCCAATCTGCAACAATTTTATTTTAGAGATTCTTGACATTTTCTGA 1068 0.5459 MSASESSREKLAGLTLDEILANQKRLAATPLPPSLPPPTKSRTLLDIIREDESTKKDRRSWKAFKDKIRLKRAGSAWTSSIHIPTSDVPISNPNSRNNFANLGRRDSVRFQTYPTDYSDMSNQYNAHQVEDLDPTEDSDSPASAAPTTRPQFSRKGSTRYAVDPSFDNNVGGVSLRPQLSRRNSTSVQTEPFRRGRVVTFRDNMDADEEVEESYDRRPETGRALSAREAVVAQEAAEAAAAAEAEEEAGRGQVTMSLMDLLEETDREMGLEGSRYILSDDDEEDDDEEGGVDEDEDVVGGGSMEHTCCICMVRHKGAALMPCGHTFCRMCSRELMVSKGNCPICNNFILEILDIF* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2087 355 SMART ring_2 307 344 IPR001841 -
Lja1g2087 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 355 IPR013083 -
Lja1g2087 355 PANTHER OS01G0917900 PROTEIN 5 355 - -
Lja1g2087 355 MobiDBLite consensus disorder prediction 130 194 - -
Lja1g2087 355 MobiDBLite consensus disorder prediction 274 298 - -
Lja1g2087 355 Pfam Zinc finger, C3HC4 type (RING finger) 304 348 - -
Lja1g2087 355 MobiDBLite consensus disorder prediction 277 297 - -
Lja1g2087 355 MobiDBLite consensus disorder prediction 171 192 - -
Lja1g2087 355 SUPERFAMILY RING/U-box 306 351 - -
Lja1g2087 355 CDD RING-HC 307 344 - -
Lja1g2087 355 MobiDBLite consensus disorder prediction 140 155 - -
Lja1g2087 355 ProSiteProfiles Zinc finger RING-type profile. 307 345 IPR001841 -
Lja1g2087 355 PANTHER OS01G0917900 PROTEIN 5 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2087 Lja-Chr1 24152293 24153874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2087 1 355 C3H Transcription Factor Family AT3G07120 37.135 7.94e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2087 - - gmx:100795449 417.927