Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2079 ATGGCGGACGTTCATCTCTTCAACAACATCACCCTCGCAGGCCGCGGCGGCACGAAAGATTCATTCAGGGAGAAAAGTTTCCACATGCCCAATTCCAACACCCAGTATGTTAGTGATGAAATAATGCCTATGGCTGATGTTGGTGATGAAATAATGCCTATGGCTGATGTTGGTGATGTAATAATGCCTATGGCTGATGTTGGTGATGAAATAATGCCTATGGCTGATGTTGATGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGGAATCTTTACACCAAGAGGACGTTACAGTGTTGAGTTACACCTCTCATTCTTCCGACTTAGAGGACCGGCTAATGATTTCAAAATCCAGTATAGCAGTATAGTTCGCCTATATTTACTTCCTAAGTTAAATCAGCCACGTACTTTTGTCGTTATTAGTCTTGATCCTCCTATTCGGGAAGGACAAACGTTGTACCCTCATATTGTGATGCAGTTTGAATCTGATTTCGTTGTTCAATGTGAATTGGCAATAAACGAAGATCTTTATAACACTAAGTACAACGACAAGTTGGAGCTTTCTTATAAGGGTCTGATCCATGGAGTGTTCACTACAATATTATGTGGCTTGTCTGGGTCCAAAGTTACAAAGCCTGGAACATTTAGGAGTTTTGTACATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGAAGGTTATCTGTATCCCCTTGAGAAGAGCTTCTTTTTTCTACCTAAACCTCCCACTCTTATTCTTCACGAAGAGATTGACTATCTGGGATTTGAGCAACATATTGCCCGTGGTTCAAAAATATGCTATTTTCACCTTCTCATCAGACTAAAATCTGAGCAAGAGCATCTCTTCTGCAATATTCAGAGAAATGAATTCAACAAGTTGACTGCGTTTATCATATCAAAGGGGTTAAAATTGATGGACTTAAGAAGTGCCCATGCCCAGCCAGCTGTTGCTTTGGCTCGGATTCTTGGGAATGATGATGCTGTTGATCCACATCTAGAGCGCATTAAAAATGAAGCTGGTGGAGATGAAAGTGATGAGGAGGATGAAGATTTTGTTGTTGACAAGGATGATGGAGGTTCTCCAACTGATGATTGTGGGGGAGAAAATTCTGATGCCAACGATGGTGGGGATGAGAAAGAGAAGCCTGCCAAAAAGAAACCAGAGAAGGATCTGTCTACTAAGGCATGTACTTCTAAGAAGAAATCAAAAGATGCTGATGAAGATGGAAAGAAGAAAAAACAGAAGGAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTCATGGTCTTTTCTCAAATGGAAACAGAGAAAACTAATTCTGGAATGTCATTTACGGATGTGGGGAAAGTACTTGGAGAGAAATGGAAAAAGATGTCAGCGGAGGATAAAGAACCATACGAGGCAAAAGCTGCCCGGGATGATAAGAAATTTTATATGGATGAAGATTAG 1485 0.4094 MADVHLFNNITLAGRGGTKDSFREKSFHMPNSNTQYVSDEIMPMADVGDEIMPMADVGDVIMPMADVGDEIMPMADVDAGGEDAVVTFEGIGIFTPRGRYSVELHLSFFRLRGPANDFKIQYSSIVRLYLLPKLNQPRTFVVISLDPPIREGQTLYPHIVMQFESDFVVQCELAINEDLYNTKYNDKLELSYKGLIHGVFTTILCGLSGSKVTKPGTFRSFVHGYAVKSSLKAEEGYLYPLEKSFFFLPKPPTLILHEEIDYLGFEQHIARGSKICYFHLLIRLKSEQEHLFCNIQRNEFNKLTAFIISKGLKLMDLRSAHAQPAVALARILGNDDAVDPHLERIKNEAGGDESDEEDEDFVVDKDDGGSPTDDCGGENSDANDGGDEKEKPAKKKPEKDLSTKACTSKKKSKDADEDGKKKKQKEKDPNAPKRAMSGFMVFSQMETEKTNSGMSFTDVGKVLGEKWKKMSAEDKEPYEAKAARDDKKFYMDED* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2079 494 Gene3D High mobility group box domain 415 493 IPR036910 -
Lja1g2079 494 MobiDBLite consensus disorder prediction 346 439 - -
Lja1g2079 494 CDD PH2_SSRP1-like 218 317 - -
Lja1g2079 494 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 432 494 IPR009071 -
Lja1g2079 494 Gene3D - 75 214 - -
Lja1g2079 494 SUPERFAMILY HMG-box 419 490 IPR036910 -
Lja1g2079 494 SUPERFAMILY PH domain-like 82 315 - -
Lja1g2079 494 MobiDBLite consensus disorder prediction 470 494 - -
Lja1g2079 494 PANTHER FACT COMPLEX SUBUNIT SSRP1 19 493 - -
Lja1g2079 494 Pfam Histone chaperone Rttp106-like 226 314 IPR013719 -
Lja1g2079 494 Pfam HMG (high mobility group) box 432 489 IPR009071 -
Lja1g2079 494 CDD HMGB-UBF_HMG-box 432 493 - -
Lja1g2079 494 CDD PH1_SSRP1-like 83 216 - -
Lja1g2079 494 MobiDBLite consensus disorder prediction 382 432 - -
Lja1g2079 494 SMART hmgende2 431 492 IPR009071 -
Lja1g2079 494 Gene3D - 215 323 IPR011993 -
Lja1g2079 494 PRINTS Structure-specific recognition protein signature 232 250 IPR000969 GO:0003677|GO:0005634
Lja1g2079 494 PRINTS Structure-specific recognition protein signature 140 156 IPR000969 GO:0003677|GO:0005634
Lja1g2079 494 PRINTS Structure-specific recognition protein signature 250 267 IPR000969 GO:0003677|GO:0005634
Lja1g2079 494 PRINTS Structure-specific recognition protein signature 95 111 IPR000969 GO:0003677|GO:0005634
Lja1g2079 494 PRINTS Structure-specific recognition protein signature 276 292 IPR000969 GO:0003677|GO:0005634
Lja1g2079 494 PRINTS Structure-specific recognition protein signature 117 133 IPR000969 GO:0003677|GO:0005634
Lja1g2079 494 PRINTS Structure-specific recognition protein signature 292 310 IPR000969 GO:0003677|GO:0005634
Lja1g2079 494 PRINTS Structure-specific recognition protein signature 205 218 IPR000969 GO:0003677|GO:0005634
Lja1g2079 494 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 19 493 - -
Lja1g2079 494 SMART Rtt106_2 224 317 IPR013719 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2079 Lja-Chr1 24061045 24064876 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lja1g2079 Rtt106 2.9e-15 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2079 K09272 - lja:Lj1g3v3556890.1 924.08