Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2074 ATGGATGATTACCTCTGTGAAGTATACCCAAACCCAAACATGGACAACCCTGAAGAAAATTCACTTTCACTCTGCCCCAACGATGATCAGTACTTCAATATAGAGGCTGTGATCACAAATACGCACGTTTTCAGTATCAGGCAATTACGCACTCACTCAGACACTTATTATCACAGTTTTCCCAACATCTCAAAGGATAACATGAATAAAGAAACCATTGAGTGTTTTCTTTCTTGCATTGAGACGTTGCCAAAGGATGCACTCAAGTTTGTGGGGGCGAATATCTTGGAATGTGCTCATGACATGGCCACTAGCAGGACCAATAAAAATAGAAAGGTCTTGTCCATGATTGTGGATGTGGTTATCACCACGGGCAATGAAGATGAAACTGATGATGAAGATGATAATGATAATGATTATGATGATGGTGGTTTTGAAGAGGACGAGGAAGAAGATTGTGGGTTGGTGCCTGCAGCAGTGTCATCCATTGAGGGGTTGGAGACTCTGAGTGGTGAAGAAGAAGGGTTCTTGAAGGGGAAGTGTGCGATCTGTTTTGAGGATTTTCATGTTGGTGTTCGTATGCCTTGTTTGCACATGTTTCATAAGGATTGTATCACTAGTTGGTTGCAGAAGGCCAATTCTTGCCCTCTTTGTCGGTTTCAGATGCCTACTGATGAAGAAATTAAATGA 690 0.4188 MDDYLCEVYPNPNMDNPEENSLSLCPNDDQYFNIEAVITNTHVFSIRQLRTHSDTYYHSFPNISKDNMNKETIECFLSCIETLPKDALKFVGANILECAHDMATSRTNKNRKVLSMIVDVVITTGNEDETDDEDDNDNDYDDGGFEEDEEEDCGLVPAAVSSIEGLETLSGEEEGFLKGKCAICFEDFHVGVRMPCLHMFHKDCITSWLQKANSCPLCRFQMPTDEEIK* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2074 229 SUPERFAMILY RING/U-box 180 224 - -
Lja1g2074 229 Pfam Ring finger domain 180 219 IPR001841 -
Lja1g2074 229 PANTHER F6A14.12 PROTEIN-RELATED 61 224 - -
Lja1g2074 229 SMART ring_2 181 218 IPR001841 -
Lja1g2074 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 229 IPR013083 -
Lja1g2074 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 61 224 - -
Lja1g2074 229 MobiDBLite consensus disorder prediction 125 151 - -
Lja1g2074 229 ProSiteProfiles Zinc finger RING-type profile. 181 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2074 Lja-Chr1 24010949 24011638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2074 136 227 C3H Transcription Factor Family AT5G01980 41.346 2.10e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2074 - - cam:101499491 175.637