Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2060 ATGTCTGCCAATTTCTGGACATCATCTCACTACAAGCACCTTCTGGATCAAGAAGATGTGGATATGTTGAATCCACTTGACAAAGAAAAGGGTATCACACTTGAGGATTTTAAGCTCATTAAGATGCACATGGCCAATTATATTTTGAAATTGGCTCAGCAAGTAAAAGTGAGGCAGAGGGTTGTTGCCACTGCAGTTGCTTACATGAGGCGTGTTTATACCAGGAAGAGTATGACTGAATATGATCCCCGCCTGGTAGCTCCAACCTGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTTCAGGCCCGGCTTCTTGTATTTTACATTAAAAAATTATATGCTGATGATAAGTATAGATATGAAATCAAGGACATTCTTGAAATGGAAATGAAGATTTTAGAAGCACTGAACTATTACCTGGTTGTATTCCACCCCTACCGTTCCCTATCTCAGTTCCTTCAGGATGCTGGTCTGAATGATCTAAGCATGACTCAACTAACTTGGGGGATTGTAAATGACACATACAAGATGGACCTGATTCTTGTACATCCTCCACACCTAATTGCTTTAGCTTGCATATATATTGCTAGTGCTGTCAGGGAGAAAGACACCACTGTCTGGTTTGAAGAACTTCATGTTGATATGAATGTGGTTAAAAACATATCAATGGAGATACTTGATTTTTATGAAAGCAATAGAATGTTCACTGATGAGAGGATGCACGCTGCTCTTCAGAAGCTATAA 750 0.3987 MSANFWTSSHYKHLLDQEDVDMLNPLDKEKGITLEDFKLIKMHMANYILKLAQQVKVRQRVVATAVAYMRRVYTRKSMTEYDPRLVAPTCLYLASKAEESTVQARLLVFYIKKLYADDKYRYEIKDILEMEMKILEALNYYLVVFHPYRSLSQFLQDAGLNDLSMTQLTWGIVNDTYKMDLILVHPPHLIALACIYIASAVREKDTTVWFEELHVDMNVVKNISMEILDFYESNRMFTDERMHAALQKL* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2060 249 Gene3D - 7 240 - -
Lja1g2060 249 PANTHER CYCLIN 4 247 IPR043198 GO:0006357|GO:0016538
Lja1g2060 249 SUPERFAMILY Cyclin-like 4 144 IPR036915 -
Lja1g2060 249 CDD CYCLIN 46 135 IPR013763 -
Lja1g2060 249 PIRSF Cyclin_C_H_G 1 249 - -
Lja1g2060 249 SMART cyclin_7 149 229 IPR013763 -
Lja1g2060 249 SMART cyclin_7 46 136 IPR013763 -
Lja1g2060 249 Gene3D - 19 143 - -
Lja1g2060 249 PANTHER CYCLIN-C1-2-LIKE ISOFORM X1 4 247 - -
Lja1g2060 249 SUPERFAMILY Cyclin-like 146 237 IPR036915 -
Lja1g2060 249 CDD CYCLIN 146 213 IPR013763 -
Lja1g2060 249 Pfam Cyclin, N-terminal domain 43 142 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2060 Lja-Chr1 23840008 23848855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2060 60 201 Core Cell Cycle Gene Families AT5G27620 30.263 3.73e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2060 K15161 - gmx:100784345 454.521