Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2053 ATGGAAGAAGTGATGGACATACCCCCAATGGAGGCGATGAACGAGGACTTCGATCTCCCCGAAGACAAGGTGGGCGAGGAGAGAGAGATCGGCAACAGTGGTCTCAGGAAGAAGCTCCTCAAGGAAGGTCAAGGTTGGGAAACCCCTGAAGTCGGCGACGAAGTCCAAGTTCACTACACGGGGACCTTGCTTGACGGGTCGAAATTCGATTCAAGCCGCGACAGGGATGCTCCTTTCTCCTTCACGCTCGGACAGGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCACTTTTCACCATACCTCCTGAGCTAGCTTATGGTGAAAGTGGTTCCCCTCCAACAATTCCTCCTAATGCAACACTCCAATTTGATGTTGAGCTTCTGTCTTGGACTAGTTTGAAGGATATAAGCAAGGATGGCGGGATATATAAGAAGATATTGACTGAGGGGGAGAAATGGGAGAACCCCAAGGATCTTGATGAAGTATTGGTTAAGTATGAGGTTCATCTGGAAGATGGAAAGCTTGTTGCAAAGTCTGATGGAGTGGAATTCACTGTCAGAGAGGGTCATTATTGTCCTGCGTTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTGAAAGTAAAGCCACAATATGGATTTGGTGTGAAGGGGCAGCCAGCACATGGTGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACGCTCGAGTTAGTCTCTTGGAAGACTGTGTCAGAAGTAACTGGTGACAAGAAGATCATAAAGAAGATCCTCAAGGATGGAGAAGGATTTGAGCGTCCAAATGAGGGGGCCATAGTGAAATTGAAACTAATTGGTAAGCTGCAAGATGGTACTGTCTTTTTGAAAAAGGGCCATGATGAAGAAGAGCTGTTTGAATTCAAGACAGATGAGGAGCAAGTCATCGATGGTCTTGATAGAGCTGTAATGACTATGAAGAAGAGTGAGGTAGCATTGTTGACTATTGCACCCGAGTATGCTTTTGGTATATCAGAGTCCCAGCAGGAGTTGGCTGTGATACCTCCTAATTCAACTGTGTATTATGAAGTTGAACTAGTGTCATTTGAGAAGGAGAAGGAGTCCTGGGATCTGAACACTCAAGAGAAAATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGTGTTGTTTAAAGCTGGTAAATATGCTAGAGCTTCCAAAAGATATGATAAGGCTGTGAAATACGTAGAGTATGATACCTCGTTTAGTGAGGAGGAGAAAAAGCAGTCGAAGACCTTGAAGGTTGCCTGCAATCTAAACAATGCTGCTTGCAAGCTGAAGTTAAATGACTTTATAGAAGCGGAGAAATTGTGTACCAGGGTGTTAAACCTTGAGAGCACAAACGTGAAAGCCCTCTATAGAAGGGCCGAGGCATTGATGCAGTTAGCTGACTTGGATTTGGCAGAACTTGACATCAAGAAAGCTCTTGAGGTTGACCCTGACAACAGGGAAGTCAAGCTGCAGTACAAGACTTTGAAGGAAAAGGTAAAGGAGTTTAATAAAAAGGAGGCGAGATTTTATGGAAATATGCTCAACAAGTTCACAAAGGCTGGGTCTTGA 1644 0.4416 MEEVMDIPPMEAMNEDFDLPEDKVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFTLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSLKDISKDGGIYKKILTEGEKWENPKDLDEVLVKYEVHLEDGKLVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVILKVKPQYGFGVKGQPAHGDEGAVPPNATLQITLELVSWKTVSEVTGDKKIIKKILKDGEGFERPNEGAIVKLKLIGKLQDGTVFLKKGHDEEELFEFKTDEEQVIDGLDRAVMTMKKSEVALLTIAPEYAFGISESQQELAVIPPNSTVYYEVELVSFEKEKESWDLNTQEKIEAAGKKKEEGNVLFKAGKYARASKRYDKAVKYVEYDTSFSEEEKKQSKTLKVACNLNNAACKLKLNDFIEAEKLCTRVLNLESTNVKALYRRAEALMQLADLDLAELDIKKALEVDPDNREVKLQYKTLKEKVKEFNKKEARFYGNMLNKFTKAGS* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2053 547 Gene3D Tetratricopeptide repeat domain 380 537 IPR011990 GO:0005515
Lja1g2053 547 PANTHER PEPTIDYLPROLYL ISOMERASE 264 376 - -
Lja1g2053 547 SUPERFAMILY TPR-like 383 541 IPR011990 GO:0005515
Lja1g2053 547 Pfam Tetratricopeptide repeat 478 510 IPR019734 GO:0005515
Lja1g2053 547 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 374 IPR001179 GO:0003755
Lja1g2053 547 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 163 254 IPR001179 GO:0003755
Lja1g2053 547 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 137 IPR001179 GO:0003755
Lja1g2053 547 SUPERFAMILY FKBP-like 12 143 - -
Lja1g2053 547 SUPERFAMILY FKBP-like 143 259 - -
Lja1g2053 547 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 264 376 - -
Lja1g2053 547 Gene3D - 28 143 IPR046357 GO:0003755
Lja1g2053 547 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 140 IPR001179 GO:0003755
Lja1g2053 547 ProSiteProfiles TPR repeat profile. 477 510 IPR019734 GO:0005515
Lja1g2053 547 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 376 547 - -
Lja1g2053 547 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 264 - -
Lja1g2053 547 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 377 IPR001179 GO:0003755
Lja1g2053 547 Coils Coil 510 530 - -
Lja1g2053 547 SMART tpr_5 443 476 IPR019734 GO:0005515
Lja1g2053 547 SMART tpr_5 477 510 IPR019734 GO:0005515
Lja1g2053 547 SMART tpr_5 394 427 IPR019734 GO:0005515
Lja1g2053 547 Gene3D - 144 257 IPR046357 GO:0003755
Lja1g2053 547 PANTHER PEPTIDYLPROLYL ISOMERASE 376 547 - -
Lja1g2053 547 PANTHER PEPTIDYLPROLYL ISOMERASE 1 264 - -
Lja1g2053 547 Gene3D - 258 378 IPR046357 GO:0003755
Lja1g2053 547 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 257 IPR001179 GO:0003755
Lja1g2053 547 SUPERFAMILY FKBP-like 261 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2053 Lja-Chr1 23789187 23796425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2053 23 542 Calmodulin-binding Proteins AT3G25230 79.463 0.0 847
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2053 1 23789187 23796425 Lja3g4391 3 85166839 85172082 PCT