Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2051 ATGGGTATTTCTAGGGATTCCATGCACAAGAGACGTGCCACTGGTGGCAAGAAGAAGAGCTGGAGGAAGAAGAGAAAGTATGAGCTCGGTCGCCAGGCAGCAAACACCAAGTTGTCAAGCAACAAGACTATTAGGAGGATTCGTGTTAGAGGTGGCAACGTGAAGTGGAGGGCACTGAGATTGGATACTGGAAACTTTTCATGGGGTAGTGAAACAGTAACTCGCAAGACGCGTCTATTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGAACCCAAACCCTGGTCAAAAGTGCTATTGTTCAGGTTGATGCTGCTCCGTTCAAACAGTGGTACCTTCAGCACTATGGGGTTGATATTGGCAGAAAGAAGAAAACAACATCCAAGAAGGACTCTACAGAGGAGGGTGAAGCTGCTGCTGAAGACGGAAAGAAAAGTAACCATGTGCAGAGGAAACTTGAGAATCGCCAGAAAGATCGTACTCTTGATGCCCACATCGAAGAGCAATTTAGTGGTGGCCGATTGCTGGCATGTATTTCTTCTCGCCCGGGTCAATGTGGCAGGGCTGATGGGTACATACTAGAAGGTAAGGAACTGGAATTTTACATGAAGAAACTTCAGAAGAAGAAGGGAAAGGGTGCTGCAGCCTAA 657 0.4688 MGISRDSMHKRRATGGKKKSWRKKRKYELGRQAANTKLSSNKTIRRIRVRGGNVKWRALRLDTGNFSWGSETVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTTSKKDSTEEGEAAAEDGKKSNHVQRKLENRQKDRTLDAHIEEQFSGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAAA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2051 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 217 - -
Lja1g2051 218 MobiDBLite consensus disorder prediction 1 25 - -
Lja1g2051 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 217 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lja1g2051 218 MobiDBLite consensus disorder prediction 11 25 - -
Lja1g2051 218 Pfam Ribosomal protein S8e 5 196 IPR022309 -
Lja1g2051 218 TIGRFAM eS8: ribosomal protein eS8 1 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lja1g2051 218 Gene3D - 32 158 - -
Lja1g2051 218 CDD Ribosomal_S8e_like 5 196 - -
Lja1g2051 218 MobiDBLite consensus disorder prediction 126 162 - -
Lja1g2051 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Lja1g2051 218 Gene3D - 159 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2051 Lja-Chr1 23774202 23777056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2051 1 205 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.466 1.17e-125 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2051 K02995 - gmx:100500112 369.007