Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2050 ATGGAAAATCAATTCTTCTCTAATGGTGGTGTTCCACCTCAACTGCATTTTGACCCTTCAATGCCCACTTGGCAATCACCACCACCACCACAATCATCTGAGCAGAACCAAGATTGCTTCTACAACACCCAAACATGGGAGAATTCAACGGATCATCACGCTCTTCACTTCGATTCCGCCATGAGTTCAATGGTTTCTTCTCCTGCAGCTTCCAATTCCAACATGTCCAGTGACAATTTCGCCATCAGGGAGCTCATTGGGAAATTGGGGAACATTGGTGGTGGCGGTGATGAGATCTCACCGGGTTTTCTCAAATCAATGGCCTTGAATTCCACTGTGGCGGAATTCTCAGGCGATCCCGGGTTCGCGGCGCGGGCGGCCAAGTTTTCTTGCATTGGAAGTAGGAGTTTCAATGGCAGGAGTAGCCAATTGGGGCTGAACAACAATGCTGAGTTGACTCAGAGTCAGAGGTCTCCTTCATTGATGGAAAATGGGATGCTTCTACCTAGAGTCTCGAGTAGTCCATCGTTGAAATTGCTTGGGTCTCAAATGGAAGGGACCAATTCTCAAGAGGAATCTACAATCTCTGAGCAGAAACCTTCCCCTTGTGTCAATTCCAGGAAAAGAAAAGCTTCTTCCAGAGGAAAAGCCAAAGAAACTGCAAACTCTACCAACCCTCCCATGGATGCTGAAGCTAGCGAAGACCAAAATGCTAAGCGCGGAAAGCCGAATGAGGATGAAGGAAAAGAAAAAAATGGCTCAGTTAAGGCTGAGGAAGATTCCAAAGCGGGTACTAGTAGTGGAGGTGATGAGAAACAGAACATGAGTAGCTCAAAACCTCCTGAGCCACCAAAGGATTACATTCATGTGAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTTCGAAGGGAGAAAATCAGTGAAAGGATGAAGCTGCTCCAAGATCTTGTTCCAGGTTGCAATAAGGTCACTGGAAAAGCACTTATGCTTGATGAAATTATAAACTATGTCCAGTCATTGCAGCGTCAAGTTGAGTTCCTATCTATGAAATTGTCTTCTGTTAACACCAGGCTGGATTTTAGCACTGAAAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACAACCATTATTCCCACTAGATTCCTCAGCACAAGCCTTTTATGGGCAACAGCCACAGCAAAACTCAGCAATCCACAATAACTTTCCTAATGGAACTGTGACCCACACCTCAGTGGACCCATTACATACTGGTGATCTGTGCCAAAACCTTGGCATGCAGTTACTTCCACTAAATGGGATTAATGAAGGTGGCTCTCAGTTTCCACTAACGTTCTCTGAAGATGACCTCCACACCATAGTTCAAATGGGATTTGGTCAAACTGCAAATAGGAAAACACCAATAAGATTTCAGAGTATCAACGGCTCAAATCAAGTGCCCTATGAAAATTAA 1482 0.4433 MENQFFSNGGVPPQLHFDPSMPTWQSPPPPQSSEQNQDCFYNTQTWENSTDHHALHFDSAMSSMVSSPAASNSNMSSDNFAIRELIGKLGNIGGGGDEISPGFLKSMALNSTVAEFSGDPGFAARAAKFSCIGSRSFNGRSSQLGLNNNAELTQSQRSPSLMENGMLLPRVSSSPSLKLLGSQMEGTNSQEESTISEQKPSPCVNSRKRKASSRGKAKETANSTNPPMDAEASEDQNAKRGKPNEDEGKEKNGSVKAEEDSKAGTSSGGDEKQNMSSSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFSTESLISKDIFQSNNSLAQPLFPLDSSAQAFYGQQPQQNSAIHNNFPNGTVTHTSVDPLHTGDLCQNLGMQLLPLNGINEGGSQFPLTFSEDDLHTIVQMGFGQTANRKTPIRFQSINGSNQVPYEN* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2050 493 Gene3D - 293 368 IPR036638 GO:0046983
Lja1g2050 493 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 365 IPR036638 GO:0046983
Lja1g2050 493 MobiDBLite consensus disorder prediction 177 287 - -
Lja1g2050 493 Pfam Helix-loop-helix DNA-binding domain 300 347 IPR011598 GO:0046983
Lja1g2050 493 Coils Coil 343 363 - -
Lja1g2050 493 MobiDBLite consensus disorder prediction 233 266 - -
Lja1g2050 493 SMART finulus 302 352 IPR011598 GO:0046983
Lja1g2050 493 MobiDBLite consensus disorder prediction 1 37 - -
Lja1g2050 493 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 346 IPR011598 GO:0046983
Lja1g2050 493 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 100 IPR024097 GO:0006355
Lja1g2050 493 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 105 488 IPR024097 GO:0006355
Lja1g2050 493 MobiDBLite consensus disorder prediction 217 231 - -
Lja1g2050 493 CDD bHLH_AtBPE_like 286 371 - -
Lja1g2050 493 PANTHER BHLH TRANSCRIPTION FACTOR 32 100 - -
Lja1g2050 493 PANTHER BHLH TRANSCRIPTION FACTOR 105 488 - -
Lja1g2050 493 MobiDBLite consensus disorder prediction 177 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2050 Lja-Chr1 23766266 23769671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2050 1 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 45.415 9.65e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g2050 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2050 - - gmx:100812081 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2050 1 23766266 23769671 Lja3g4383 3 85083025 85086142 PCT