Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2046 ATGGCCAAGCCTGGGGTGTTGGATTCTGATCCGGAGGCGAAGAACATCACTGAGTTGAAGAAGGAGTTGCAGAGGTTGGTGAGGTCCATTGTTGATGATGAGGATTGCAGTGCTGAGGCCATTGATCAAGCCAAGGAGACCCTTTCTGTTCTCAGGGATTTGAAGCTGAGGAAGAAATCTTCACTGTCTTTGAAGCTTCAGAAGACTGTGGTTTTCCCAGATGAATTCAAGTGCCCAATTTCCAAAGAATTGATGAAAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAAATGGCTGAATGCTGGTAATCAGACTTGCCCTCAAACCAATCAAGTCCTCGCACACACACTCCTTATTCCAAATCACCTTGTGAGGGAGATGATAGAACAATGGTCTAAAAAGCAAGGGCTTGAATCACCCAACACTGTTCCTTATATTAATGAGGAAGCCATCAAAGAAGCTGACAGTGACCATTTTCTTTGTTTGCTTGAGAAAATGTCTTCAACACTATCTGATCAGAAAGCAGCTGCGAAAGAACTTCGCTTGTTGACAAAGAAGCATCCTTGTTACCGGGCACTTTTTGCTGATACTGAAGATGGCATCCCCCAATTGCTTAAACCAATTTGCGAAAGCAATTCTCTCGATAGCGATCTCCGAGAAGATGTAATCACAACACTCCTCAATATCTCAATTCATGATAGTAACAAAAAACCAGTAGCTGAAACTCCAATGGTCATTCCACTTCTTATGAAAGCATTGAGAACCGGAACAATTGAAACAAGAAGCAATGCTGCAGCAGCAATTTTCACTCTGTCAGCTCTTGACTCAAACAAGGAACTGATCGGAAAATCTGATGCCTTGAAGCCGTTAATTGAGCTTTTGGAAGAAGGGCATCCCTTAACCATGAAGGATGTTTCTTCAGCAATTTTTTCTATATGTCTCATTCATGAGAACAGGGCAAGAGCAGTGAAGGATGGAGCAGTGAGGGTGATTTTGACAAAGGTAAAGAACCGGATTCATGTGGCTGAATCACTAGCTATCCTCGCACTGCTTTCAACTCACCACACAGCTGTTCAAGACATGGGAGAGCTTGGAGCTGTTCCTAGCTTGCTAAGCATCATGAGAGAGGGCTTGTGTGAACGCAGCAAGGAGAATTGTGTAGCAATCCTTCAAGCTATTTGTCTCTATGATAGATCTAAGTTGAAAGAAGTAAGGGATGAAGAGAACAGCCACAGAACAATCTCTGAACTTGCAAGGACTGGAACATCAAGAGCCAAGAGGAAAGCTACTGGAATTCTTGACAGACTGAACAAGATTGTTAATATCACACACACTGCATAA 1362 0.4288 MAKPGVLDSDPEAKNITELKKELQRLVRSIVDDEDCSAEAIDQAKETLSVLRDLKLRKKSSLSLKLQKTVVFPDEFKCPISKELMKDPVIVASGQTYDRPFIQKWLNAGNQTCPQTNQVLAHTLLIPNHLVREMIEQWSKKQGLESPNTVPYINEEAIKEADSDHFLCLLEKMSSTLSDQKAAAKELRLLTKKHPCYRALFADTEDGIPQLLKPICESNSLDSDLREDVITTLLNISIHDSNKKPVAETPMVIPLLMKALRTGTIETRSNAAAAIFTLSALDSNKELIGKSDALKPLIELLEEGHPLTMKDVSSAIFSICLIHENRARAVKDGAVRVILTKVKNRIHVAESLAILALLSTHHTAVQDMGELGAVPSLLSIMREGLCERSKENCVAILQAICLYDRSKLKEVRDEENSHRTISELARTGTSRAKRKATGILDRLNKIVNITHTA* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2046 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 149 IPR013083 -
Lja1g2046 453 SUPERFAMILY RING/U-box 72 147 - -
Lja1g2046 453 Gene3D - 164 447 IPR011989 -
Lja1g2046 453 SUPERFAMILY ARM repeat 174 443 IPR016024 -
Lja1g2046 453 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Lja1g2046 453 PANTHER U BOX DOMAIN-CONTAINING 6 451 - -
Lja1g2046 453 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 451 - -
Lja1g2046 453 Pfam U-box domain 73 142 IPR003613 GO:0004842|GO:0016567
Lja1g2046 453 CDD RING-Ubox_PUB 76 118 IPR045210 -
Lja1g2046 453 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2046 Lja-Chr1 23712499 23715584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2046 134 453 U-box Gene Family AT3G07360 59.633 9.76e-128 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2046 - - gmx:100777031 693.345