Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2045 ATGGGAGGAATAGGTAAAACTACACTTGCTCGAGCACTACATAACAAACTGGCTTCCAAGTTCAGTTCCAGCTGCTGTGTTTTATATGCCCATAAAGAAATAGAAAGAGTTGGAATAGACTCTCTACAAGCAAAAATCTTTTCCGAACTTCTAGACAACGAAGCTATCCCTTCCAATGGATTGGATTATGCAATTGAAAGGATCAAACGAGCAAGGGTTCTCCTTATTCTTGATGATCTCAAAGATTCAAATCAACTTAAAGAATTAGTTGGTGGACATGACAACTTCGGCCAGGGAAGTAGAATCGTTATCACTAGCAGAGACAAGCAGGCGCTTCAGAAAGCTGAAGAAGATAAAATATATCAAGTCACAAAGATGAGTGATGAAGACTCCCTACAACTCTTCAATTTAAATGCCTTTAAACAGAACCCTTCTGTAAAAACTTATAAGACCTTGGTAGAAAGGGTATTAGAATATGCTCAAGGGGTTCCATTAGTTCTCAATGTTTTGGGCAGGTTGCTTTGTGGTAAATCAATCAAAGTATGGGAAAGTATGCTAAAAAAGCTGCAAAAGTTTCCCCATCATGAGGTTTTCAATGTGTTGAAATTAAGTTATGATGGGCTGGATGATGAAGAGAAGGACATATTTCTTGAGATTGTTTGCTTCTATGTAGGCGAACTTGAGGACATAGCACTGGATTTACTAGATGGTTGTGGTTTTTCTGCTCACATTGGAATGGATGTTCTTAAAGATAGGGGACTTATATCTATTTCGCACCATCAAATCGTGATGCATGATCTAATACTGGAAATGGGCCTACAAATTGTTAGTCAACAACACGTCAACAACAATCCTAGAAAACATGTTGGTTTATGCAAGTATGAAGAAATTTATAACAAGCAGGGATTTCCTCTAAGATCTTTGCTGCTGAGCTCTCGTCGAAAAAATCTTCCGGATTGTTTACAAATTCTTTGTTGGGAGGGATTTCCTCTAAGATCTTTGCTGCTGAGCTCTCGTCGAAAAAATCTTGTTAAACTTTACATGCGCAATAGCCATCTTGAACAACTTTCGGAGGATGACCTGCTCAAACTTTTATGGTTAAATAGTTGTGTTGAGCTTACGAGTTTGAATATTCGTAGCAATATTCTATCAAGATCTTTTGGATTAGTGGGGCTCTATAATTGTTGGCGACTCAACGAGTTTTCAATATGTGGAACTAGGGCGGTTGGTGAATTCTCAGGAGCCAAAGAAATTTACGATGATGCACGATGTCTGGATGTAGAATATTCAAATGATCTTGGAAAATTAAGAGGAATTACACCGTCGGGATTTATCCATGAGCTCTGTTGGTTGAAGATGATTCCGTCTTCCATTGGAACACTCACCAAACTTTGCAAGTTAGATCTTCGCTACTGTGAATCACTTAAAACTTTTCCCAGCAGCATTTTCAAATTGAAGTTGACAGGACTTGATTTAACTGGTTGCTCAAAGCTAAAGACCTTCCCAGAGATCTTGGAGCCTGCAGAAAGTTTTACTCACATTGGGTTAATAGGTACAAAAATTAAAGAACTCCCTTCATCATTGGACCGCTTGGTGGGTCTTCAAACCTTGCGTATAGCGTCTCATGATCTAGAGTCACTTCCAAACACCATTGGCAATCTAAACCTTCTCTCTTGCCTTTACATTGAATCCTGTGATAAATTAACAGAAATCCCAAATGACATAGTTCGCTTGTCATCATCATTAACGAAATTATCACTGAGAAATATCGGAATTGTTAGCCTTCCGGAGAGTATTGCTCATCTTTCACGCTTGGAATCACTTGATGTAAGTCGATGCAAAAAGCTTGAATGTATCCCGGCACTTCCACCATCTATGAAAAAGTTATTGGCATTTAATTGCCCATCCATTACAAGAGTGGTGCCAAACCCGTCGGATTCCAAAGAGGGTACCTTCATATTTAATTTAACCAGTAGTGGTGAACACAATCCAAGTGCTCATTGTAATATTGTGGAAGATGCCAGGCGTAGGATCATTGAGGGTGCATATAGGTCTGTGTACTATTGCTTTCCAGGGAGTGCAGTTCCCCATTGGTTCCCTTATCATTGTGAGGGGAATTCATTGACTTTGGATAAAGATTCTCTAAATATGTGGCATGATAACAGGGTCTCTGGTTTGGCTGTGTGTGTCGTTTTGCAAAATCCATTTTGTGATTATCTTAGATTCAGCTTAACATATGAATCTGATGGCCGCACACACGAACTTCGTTGCGATGATGATCAGCTGGAAAAATCTTTGAACAAGAGTTTGTTTCAAATGGAAGATGACATGGGATTTCACACATTCCTATGGAAATATGACTTAATGGACTCTGCAAACATCGACAAAGGGACCTTTCATGCCCTCAAATTCACATTTGAGACCAGCACTCTCACTTGGTTAAATATTGCCACCGTGAAAAGCCTTGTTCGAGTTTCAAATAATGACTTCGAAGAAGAACGTAGTCGGAAGAAACATGCTGTCAAATGGTTTGGGCATTTCAACATTGTGCAGGGTGTTGCCAAATACAGCTGCTCACATGGCATGAGAGGCAGTATAAATTCTTCAGGATCTCCATTTGAAATGATAATTACAAAATGTTGTTCTTCATCATCTTGGTTTTGGTATCTATTTCAAAATCATTTGGATATGTTTGTGAAGATGTACACATCAAGGAAGAAAATCTACAAGGGTAAGGATGCTGATCCTACTGAGTTTGAAGAGTCAGTCGGGCAGGGTGTAATTTTGATTGCCACCCGGAGGATATTGAGGCCACCAATGAAGGGTTTTGTTGTTCAACGTCCCCGCACGCGAACCCTTACGGTTACAGCTGTTCATGAAGCAATGCTGGAGGATGTCATGTTGCCTGCTGAGATTGTTGGGAAGCGTGTTAGGTACCGAGTTGATGGATCCAAGATTATGAATGTAGAGCTGTTGCTTCCTATTAACTTCTAA 2994 0.3975 MGGIGKTTLARALHNKLASKFSSSCCVLYAHKEIERVGIDSLQAKIFSELLDNEAIPSNGLDYAIERIKRARVLLILDDLKDSNQLKELVGGHDNFGQGSRIVITSRDKQALQKAEEDKIYQVTKMSDEDSLQLFNLNAFKQNPSVKTYKTLVERVLEYAQGVPLVLNVLGRLLCGKSIKVWESMLKKLQKFPHHEVFNVLKLSYDGLDDEEKDIFLEIVCFYVGELEDIALDLLDGCGFSAHIGMDVLKDRGLISISHHQIVMHDLILEMGLQIVSQQHVNNNPRKHVGLCKYEEIYNKQGFPLRSLLLSSRRKNLPDCLQILCWEGFPLRSLLLSSRRKNLVKLYMRNSHLEQLSEDDLLKLLWLNSCVELTSLNIRSNILSRSFGLVGLYNCWRLNEFSICGTRAVGEFSGAKEIYDDARCLDVEYSNDLGKLRGITPSGFIHELCWLKMIPSSIGTLTKLCKLDLRYCESLKTFPSSIFKLKLTGLDLTGCSKLKTFPEILEPAESFTHIGLIGTKIKELPSSLDRLVGLQTLRIASHDLESLPNTIGNLNLLSCLYIESCDKLTEIPNDIVRLSSSLTKLSLRNIGIVSLPESIAHLSRLESLDVSRCKKLECIPALPPSMKKLLAFNCPSITRVVPNPSDSKEGTFIFNLTSSGEHNPSAHCNIVEDARRRIIEGAYRSVYYCFPGSAVPHWFPYHCEGNSLTLDKDSLNMWHDNRVSGLAVCVVLQNPFCDYLRFSLTYESDGRTHELRCDDDQLEKSLNKSLFQMEDDMGFHTFLWKYDLMDSANIDKGTFHALKFTFETSTLTWLNIATVKSLVRVSNNDFEEERSRKKHAVKWFGHFNIVQGVAKYSCSHGMRGSINSSGSPFEMIITKCCSSSSWFWYLFQNHLDMFVKMYTSRKKIYKGKDADPTEFEESVGQGVILIATRRILRPPMKGFVVQRPRTRTLTVTAVHEAMLEDVMLPAEIVGKRVRYRVDGSKIMNVELLLPINF* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2045 997 Pfam C-JID domain 690 791 IPR045344 -
Lja1g2045 997 Pfam NB-ARC domain 1 199 IPR002182 GO:0043531
Lja1g2045 997 SUPERFAMILY L domain-like 263 636 - -
Lja1g2045 997 Pfam Ribosomal protein S7e 917 991 IPR000554 GO:0003735|GO:0005840|GO:0006412
Lja1g2045 997 Gene3D - 1 123 IPR027417 -
Lja1g2045 997 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 451 737 - -
Lja1g2045 997 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1 299 - -
Lja1g2045 997 Gene3D Ribonuclease Inhibitor 446 640 IPR032675 -
Lja1g2045 997 Gene3D - 125 209 IPR042197 -
Lja1g2045 997 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 451 737 IPR044974 GO:0006952
Lja1g2045 997 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 299 IPR044974 GO:0006952
Lja1g2045 997 PRINTS Disease resistance protein signature 67 81 - -
Lja1g2045 997 PRINTS Disease resistance protein signature 600 616 - -
Lja1g2045 997 PRINTS Disease resistance protein signature 160 174 - -
Lja1g2045 997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 217 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2045 Lja-Chr1 23703327 23709528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2045 463 608 WRKY Transcription Factor Family AT4G12020 36.735 1.15e-13 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2045 - - lja:Lj1g3v3590720.1 745.347