Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2042 ATGAACGGTACCAACACGCTTGACCTCCCAACTTTGAAGGTGATCTCCGCCGTCGGACGCGGCGCCAAGGGCGTTGTTTTCCTCGCGAGAACATGCAGCGGGGCCGCGTCGTCGAACGGGGACGACTGGCTGGCCTTGAAAGTGATATCCAAAGAACTGCTTCAGAAGAAGAATAGGAACAACCACCGCGAGTGCAAGAGGGTCTCGTTTGAGCAGCGAATACTACGTCGTTTCGACCACCCTCTGTTGCCGCGGCTGCGTGGGGTTTTCGAGACCAAGAACCTCACAGGCTTCGCCATCGACTATTGCCATGGTGGGAATCTGCATTCTCTCCGGAAGAAGCAATCTCAGAACATGTTCTCCGAAGAAACCATAAGGTTTTACGCTGTTGAATTGGTCCTGGCGTTGGAGTATTTGCACAATTTTGGAGTGGTGTACAGAGATTTGAAGCCTGAGAACATCATGATCCAAGAAACCGGTCACATAATGCTGGTGGATTTCGACCTCTCCAAGAAGCTGAACCCAAGATCACCGAACGCGCTGAGTTGCAACTCGTCCCCGGGTTCTGACTCGTCCGGGGAGGGATCAGATCGTCGTCCGAGGAGGAGACGCTTCTCGCGGCTCTCCTGTTACTGTAACTCAGGGATACCGTCGCATGAGTTGGTGAGTCAACTCAATGCCAACTCGGCACGCCGGAGCGAGTCAGACTCGGTGGAGAAGTCCAACTCGTTTGTCGGAACGGAGGATTACGTGGCACCGGAGGTTATTTCGGGAGGAGGACACAGATTTGGAGTTGATTGGTGGTCATTCGGCGTCGTTTTGTATGAGATGTTGTACGGAACGACGCCGTTTAGGGGCTCAAATAGAAAAGAAACTTTCGATAGGATTTTGACGGTGGAGCCTGATTTGAGCGGCGAAACGACGCCGTTGAGGGACTTGATTAGGAAGTTGCTTGAGAAGAATCCTGACCGTAGGATTGAGCTTGATGAAATAAAGGGCCACGATTTCTTCAAAGGTGTGAAGTGGGACACGGTCTTGCATATAGCGCGCCCACCGCACATTCCTCAGAATGATGTTGAGGACAAGGCGGGGTATTCGACAAAAGATGTGGAGTTGTTTGTCCATAAGATATTTTTCACGAAAAAGAAAAATAGTTTTGATGGAGAAGAAAATAATGAGCCTGTAAAAAAGAAGGATGAAGGGGAAAATTACAACAATAATAATCACAGTTGTAAGAAGAATGTGTGGGTTCAGATGTTGTCTCAAAATCCCACTAAAGACGAAAACTTTTTAATTTTTTGA 1302 0.4908 MNGTNTLDLPTLKVISAVGRGAKGVVFLARTCSGAASSNGDDWLALKVISKELLQKKNRNNHRECKRVSFEQRILRRFDHPLLPRLRGVFETKNLTGFAIDYCHGGNLHSLRKKQSQNMFSEETIRFYAVELVLALEYLHNFGVVYRDLKPENIMIQETGHIMLVDFDLSKKLNPRSPNALSCNSSPGSDSSGEGSDRRPRRRRFSRLSCYCNSGIPSHELVSQLNANSARRSESDSVEKSNSFVGTEDYVAPEVISGGGHRFGVDWWSFGVVLYEMLYGTTPFRGSNRKETFDRILTVEPDLSGETTPLRDLIRKLLEKNPDRRIELDEIKGHDFFKGVKWDTVLHIARPPHIPQNDVEDKAGYSTKDVELFVHKIFFTKKKNSFDGEENNEPVKKKDEGENYNNNNHSCKKNVWVQMLSQNPTKDENFLIF* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2042 433 MobiDBLite consensus disorder prediction 178 193 - -
Lja1g2042 433 SUPERFAMILY Protein kinase-like (PK-like) 13 361 IPR011009 -
Lja1g2042 433 PANTHER FLIPPASE KINASE 1-RELATED 4 395 - -
Lja1g2042 433 MobiDBLite consensus disorder prediction 386 406 - -
Lja1g2042 433 Gene3D Transferase(Phosphotransferase) domain 1 237 356 - -
Lja1g2042 433 Gene3D Transferase(Phosphotransferase) domain 1 107 176 - -
Lja1g2042 433 ProSiteProfiles Protein kinase domain profile. 12 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2042 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Lja1g2042 433 PANTHER SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN 4 395 - -
Lja1g2042 433 MobiDBLite consensus disorder prediction 178 202 - -
Lja1g2042 433 SMART serkin_6 12 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2042 433 MobiDBLite consensus disorder prediction 386 408 - -
Lja1g2042 433 Pfam Protein kinase domain 14 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2042 433 Pfam Protein kinase domain 239 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2042 433 Gene3D Phosphorylase Kinase; domain 1 13 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2042 Lja-Chr1 23664693 23666103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2042 4 433 AGC Kinase Gene Family AT3G25250 53.061 1.53e-148 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja1g2042 Pkinase 5.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2042 K20714 - gmx:100813693 547.354