Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2024 ATGAAGTTCAACATTGCAAATCCAACCACTGGGTGCCAGAAGAAGCTCGAGATTGACGATGATCTGAAACTACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATTGGAGATGCACTTGGTGAGGAATTTAAAGGCTATGTCTTCAAAATCACTGGAGGTTGTGACAAACAAGGTTTCCCAATGAAGCAGGGAGTGCTGACCCCAGGTCGTGTTCGTCTCTTGCTTCACAGGGGGACACCTTGTTTTCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGGAAATCTGTTCGTGGGTGTATTGTCAGTCCAGATCTCTCTGTTTTGAACTTGGTCATTGTGAAGAAGGGTGAGAATGATTTACCAGGTCTGACCGACACTGAGAAGCCTAGGATGAGAGGTCCAAAGAGAGCATCCAAAATCCGTAAGCTGTTCAACCTGTCCAAAGAGGATGATGTGAGGAAGTATGTCAATACATACCGTCGGACATTTACAACAAAAGCTGGTAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCTCTTACACTCCAGAGAAAGCGCGCAAGGATTGCTGACAAGAAGAAGAGAATCGCCAAGGCAAAATCAGAGGCAGCCGAGTACCAGAAGCTCCTCGCCTCCAGGTTGAAGGAGCAGAGAGAGCGTCGCAGCGAGAGCTTGGCAAAGAGGAGGTCCAAGCTGTCCAGTGTTTCTAAGCCAGCTGTTGCTATATAG 750 0.4813 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVIGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSVSKPAVAI* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2024 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lja1g2024 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 - -
Lja1g2024 249 Coils Coil 189 216 - -
Lja1g2024 249 MobiDBLite consensus disorder prediction 219 237 - -
Lja1g2024 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Lja1g2024 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lja1g2024 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lja1g2024 249 MobiDBLite consensus disorder prediction 219 249 - -
Lja1g2024 249 Gene3D - 133 234 - -
Lja1g2024 249 PIRSF RPS6e 1 248 IPR014401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2024 Lja-Chr1 23496095 23501071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2024 1 248 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.486 4.03e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2024 K02991 - gmx:100786559 439.884