Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2016 ATGGTAGTGGATCTGGACAGGGGAAATGAAGCAGAACATAGCTGTCTTGAAGAGAGTACAAGTGTTGGAGTTGACGTTCAAGAGCCATATGTTGGCATGGAATTTGATTGTGAAGAAGATGCCAGGAAATTTTATGTTGAATACGCCAAACGGGTAGGATTTGTTGTACGCATTATGCAACGTCGGCGTTCTGGAGTTGATGGGAAAACTCTTGCCCGTCGACTTGGATGTAACAAACAAGGATTCTCATCACACAACAAGGGAACATTGGGGCCAGAGAAAAAGCCAAGACCTAGTGCCCGTCAAGGTTGCAAGGCAACAGTTTTGGTGAAGTTAGAAAAATCTGGAAAATGGGTTGTTACAAGATTTGTAAAGGATCACAACCATCCTCTAATTCCTACAACCAATGGGTTTAGTACAGTGGGTGATAAAGATGAGAAAATTGCAGAACTTTCTATGGAGTTAGAGCGCCAAGATCAACTGTGTGCTGCCTACCGAGAAAAGCTACTCAGCTTCATAAACAAAGTTGAGGACCAAACAGAGGAACTGTCCACAAAAATTCAGCTCATTGTTGAAAATGTTAGGAGAGCTGAGTCAGAAAGCAAAAATATTCCTAGAACAGAAAGTCACGGTTCTTAA 639 0.421 MVVDLDRGNEAEHSCLEESTSVGVDVQEPYVGMEFDCEEDARKFYVEYAKRVGFVVRIMQRRRSGVDGKTLARRLGCNKQGFSSHNKGTLGPEKKPRPSARQGCKATVLVKLEKSGKWVVTRFVKDHNHPLIPTTNGFSTVGDKDEKIAELSMELERQDQLCAAYREKLLSFINKVEDQTEELSTKIQLIVENVRRAESESKNIPRTESHGS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2016 212 Coils Coil 173 200 - -
Lja1g2016 212 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 2 205 - -
Lja1g2016 212 MobiDBLite consensus disorder prediction 79 102 - -
Lja1g2016 212 Coils Coil 148 168 - -
Lja1g2016 212 Pfam FAR1 DNA-binding domain 43 132 IPR004330 -
Lja1g2016 212 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 2 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2016 Lja-Chr1 23428156 23432556 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g2016 FAR1 1.6e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2016 - - vun:114183030 345.125