Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2012 ATGGCTCCTAAGTTTCCTCTGGAGAACCCAACAACCCACTTTTTCAAGATCATAACCCTTCATGATCATGAAGGAAAGCTAATGATCCCAAGAGCATTTGTGGAGAAATATGGAGAAGGCTTGCCGAAAACTGTATTTGTTAAGCCTCCAAATGGTGCAGAGTGGAAATTAGATTTGGTTAAAAGTGATGGTGAAATATGGTTTCAAAAGGGGTGGAAAGAGTTTGCAGAACATCATTCTCTAGCTCATGGCCATCTTCTGCTTTTCAGATACGGAGGAACTTCCCATTTTCAGCTACGCATCTTTGCTATGAATGCCTTGGAGATAAACTATCCTGTGAAAACAGTAGAATGTAAAAGGGCCTCTGATGCTAAAGGAAAGAAACCGGCAAATAATGAAAATTCAGAAGATTACAAAGAAGGTCGAAAAAGAAAAGCTAACTTGTCATTAGAAGTTCTTCAACCATGTAAAATGGAAACTGGTGGATGTGTTAAAGCTGGAAGTGCCTTCAAATTCCGAAAGACAGCATCGCCCCATACTGACAAAATGTGTAAAGGAAAACAAGTGATTACTGCTAAGCAAGTTACAGCTCTTGAAAGAGCAAGCTCTTTCAAAATTTGTAATCCGTCCTTCCTGATTTTCATGCATCCCTCATATATCCGTGGTTACATGAATTTACCATCTAATTTTTGTCTGAGACACTTAGATTTGAGAAAACCAAGGGGATTCATCAATCTTGAAATGTTAAATGGGACAGTTTCGACTGTAAAGTACCTAATCAAGAAAAGCAATACACAAAAGAAAATTGTACTTGGACGTGGATGGAAAGCATTTGTAAAGGACAATAACTTGAAAGTTGGTGATGTTTGCTCCTTTGAGCTCATTGCCAAGACTTGTAACACCTTCCAGGTTCACATCTTTAGAGAGTCAGACAATGCAAATTGTCCAACATCTCAAGGAAAACAAGTGATTGCTGCCAAACAAGTTACAGCTCTTGACAGAGCAAGCTCTTTCAAAACTTGTAATCCATCCTTCCTGATTTTCATGCGTCCTACATATGTTACCCGTGGTGAGATGGTAAGCTGA 1086 0.3904 MAPKFPLENPTTHFFKIITLHDHEGKLMIPRAFVEKYGEGLPKTVFVKPPNGAEWKLDLVKSDGEIWFQKGWKEFAEHHSLAHGHLLLFRYGGTSHFQLRIFAMNALEINYPVKTVECKRASDAKGKKPANNENSEDYKEGRKRKANLSLEVLQPCKMETGGCVKAGSAFKFRKTASPHTDKMCKGKQVITAKQVTALERASSFKICNPSFLIFMHPSYIRGYMNLPSNFCLRHLDLRKPRGFINLEMLNGTVSTVKYLIKKSNTQKKIVLGRGWKAFVKDNNLKVGDVCSFELIAKTCNTFQVHIFRESDNANCPTSQGKQVIAAKQVTALDRASSFKTCNPSFLIFMRPTYVTRGEMVS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2012 361 CDD B3_DNA 13 102 IPR003340 GO:0003677
Lja1g2012 361 Gene3D - 7 106 IPR015300 -
Lja1g2012 361 CDD B3_DNA 209 308 IPR003340 GO:0003677
Lja1g2012 361 MobiDBLite consensus disorder prediction 122 142 - -
Lja1g2012 361 ProSiteProfiles B3 DNA-binding domain profile. 209 310 IPR003340 GO:0003677
Lja1g2012 361 PANTHER B3 DOMAIN-CONTAINING 8 309 - -
Lja1g2012 361 SMART B3_2 14 105 IPR003340 GO:0003677
Lja1g2012 361 SMART B3_2 211 310 IPR003340 GO:0003677
Lja1g2012 361 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 309 - -
Lja1g2012 361 Gene3D - 189 312 IPR015300 -
Lja1g2012 361 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Lja1g2012 361 SUPERFAMILY DNA-binding pseudobarrel domain 9 112 IPR015300 -
Lja1g2012 361 SUPERFAMILY DNA-binding pseudobarrel domain 205 309 IPR015300 -
Lja1g2012 361 Pfam B3 DNA binding domain 14 101 IPR003340 GO:0003677
Lja1g2012 361 Pfam B3 DNA binding domain 214 309 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2012 Lja-Chr1 23383986 23387877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2012 10 311 B3 DNA Binding Superfamily AT3G18990 30.145 4.97e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g2012 B3 8.2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2012 - - lja:Lj1g3v3690290.1 406.371