Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2002 ATGCAGCTCAAACGTCTCTGCATTGTTTTGCCACCACATTCAGGTGATCTGAAGCAACCTGAAATGGGTGTCCAACAAGCCTTTCAATCTGCAAAGGAACAAGCTCAGGCCAGAAAGCCTCACAGGGCTTGTGGGGAGCAAGTTCTTGCTTTGCTTCATGATTCTTTGAGCAAGCTATGCAGCTCAGGGTGGTGGAGGAAGAAGAATTCCAGCACGTTGTTTCATGACATGGATGGTGTGCAGGTTGCTGTCAAGATTGGCAGGGACAATCCAAGGATCTTCAGCTATGCAGAGATTTTCATAGGGTCTAATGGTTTTAGTGAAGATGAGGTTCTTGGGAGTGGAGGGTTTGGCAGAGTGTATAGAGCTGTTTTGCCGAGTGATGGAACTGTGGTTGCTGTGAAATGCTGCTTAGCAGGGAAGGGGAAGCAGTTTGAGAAGAGTTTTGCAGCTGAGTTAACAGCCGTGGCGGATCTTCGCCACAAGAACCTCGTGAGGCTGAGGGGTTGGTGTGTTCATGAAGATCAGTTGTACCTTGTTTATGACTACATGCCTAACCGCAGCCTCGATCGTTTACTCTTCCGCCGGCCTGAGAATTTGAAGTCTGAGCCTCTTGACTGGGGACAAAGAGGGAAAATTGTGAAAGGTTTGTGTGCGGCACTGTATTATTTGCATGAACAGCTAGAAACTCAAATCATTCACAGGGATGTGAAAACCAGCAATGTGATGCTTGATTCCCATTTCAACGCTCGCTTGGGTGACTTCGGCATGGCGAGGTGGCTAGAACATGAGCTGGAGTACAGCAATAGGAAAACATCAAGCAGAGTTTATCATTTCAGGTTGGGAGAGACATCAAGGATTGGTGGCACTATTGGGTATCTTCCACCTGAAAGCTTGCAGAAACCAAGCACTGCTACCTCCAAATCTGATGTTTTCAGCTTTGGAATTGTTGTGCTAGAAGTGGTATCTGGAAGGAGAGCAATAGATCTCACATACCCGGATGATCAAATCATTTTGCTTGACTGGATCAGAAGGCTTTCCGATGAAGGGAAGCTTCTGGAGGCGGCCGATACTCGGCTACCGGATGGATCCTACAAGCTATCTGAGTTGCAGCATCTCATTCACATAGGCCTCCTCTGCACACTCAATGACCCACAATTGAGGCCAAGCATGAAATGGGTTGTGGAAGCACTTTCTGACATTTCTTTCAAACTGCCACCACTTCCTTCATTTCTCTCCCACCCTCTTTACATCAAATTGCCTTGCCCATTTGAGACTAGTCCCAGAAGCACAAGTGGCACTAGCTCAGCCACAGAGAATGCTAGCATTGTCACCAACTATACATCATCCAACTATTTCACAGCAGCAGGAGAAACTGTATATGTAACTGCTGAAAACAAAAACAGTGAAATCATCTCTTCTAAGAGTGAGCATCACCAGCCATCATTTCCTATGGTTGAAACTCCAAGGGAAATATCATACAAGGAGATTGTGTCTGCTACAGATAACTTTTCAGATTCAAGAAGGGTTGCAGAGCTAGACTTTGGAACTGCTTATCATGGCATCCTTGATGACAGTTGCCATGTTTTGGTGAAACGCCTGGGGATGAAGACATGTCCTGCACTGCGTGATAGATTCTCTAATGAACTAAGGAATGTAGGAAGGCTCCGCCACAGGAATTTGGTGCAACTCCGTGGATGGTGCACTGAGCAAGGAGAGATGCTTGTTGTTTATGATTACTCAGCTAGTAGAATCCTCAGCCAACAACTTCTCCATCATAGTAATGGTAGAATTGGCTATTCTGTCCTCCAATGGCATCACAGGTATAAGATAGTGAAAGCACTTGCCTCAGCAGTTCTCTATCTACATGAGGAGTGGGATGAACAAGTGATCCACAGAAACATTACCTCTTCAGCTGTCATTCTTGAACCAGATATGAACCCAAGACTCAGCAGTTTTGCTCTAGCTGAATTTTTGTCAAGGAATGAACATGGCCATCATGTAACCAGTGACTCTAGGAAATCGGCTAGGGGGATTTTCGGCTACATGTCACCGGAATATGTGGAATCCGGTGAAGCATCCACAATGGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAAGTTGTCAGTGGACAGATGGCAGTGGATTTCCGGCAGCAGGAAGTGCTTTTGGTGAAGACGGTTCATGAATTTGAAATGAGAAAAAGACCATTGGAGGAATTAGCTGACATAAGACTCAATGGAGAGTACAACCACAAAGAACTAATGAGATTGGTAAGATTAGGAATTGTGTGCACCCGCTGCAACCCACAATTAAGACCAAGCATGAGACAAATAGTGAGCATCCTTGATGGAAATGATAAATTACTCAACCAGAAAAACAAAGAGAACAGGGAAGAATGGAGGCAAAGAAATGCTAGTTCTCTGTCAATGATTAAGAGAATCCAAGCTCTAGGAATACAGTAA 2469 0.4512 MQLKRLCIVLPPHSGDLKQPEMGVQQAFQSAKEQAQARKPHRACGEQVLALLHDSLSKLCSSGWWRKKNSSTLFHDMDGVQVAVKIGRDNPRIFSYAEIFIGSNGFSEDEVLGSGGFGRVYRAVLPSDGTVVAVKCCLAGKGKQFEKSFAAELTAVADLRHKNLVRLRGWCVHEDQLYLVYDYMPNRSLDRLLFRRPENLKSEPLDWGQRGKIVKGLCAALYYLHEQLETQIIHRDVKTSNVMLDSHFNARLGDFGMARWLEHELEYSNRKTSSRVYHFRLGETSRIGGTIGYLPPESLQKPSTATSKSDVFSFGIVVLEVVSGRRAIDLTYPDDQIILLDWIRRLSDEGKLLEAADTRLPDGSYKLSELQHLIHIGLLCTLNDPQLRPSMKWVVEALSDISFKLPPLPSFLSHPLYIKLPCPFETSPRSTSGTSSATENASIVTNYTSSNYFTAAGETVYVTAENKNSEIISSKSEHHQPSFPMVETPREISYKEIVSATDNFSDSRRVAELDFGTAYHGILDDSCHVLVKRLGMKTCPALRDRFSNELRNVGRLRHRNLVQLRGWCTEQGEMLVVYDYSASRILSQQLLHHSNGRIGYSVLQWHHRYKIVKALASAVLYLHEEWDEQVIHRNITSSAVILEPDMNPRLSSFALAEFLSRNEHGHHVTSDSRKSARGIFGYMSPEYVESGEASTMADVYSFGVVVLEVVSGQMAVDFRQQEVLLVKTVHEFEMRKRPLEELADIRLNGEYNHKELMRLVRLGIVCTRCNPQLRPSMRQIVSILDGNDKLLNQKNKENREEWRQRNASSLSMIKRIQALGIQ* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2002 822 SUPERFAMILY Protein kinase-like (PK-like) 90 431 IPR011009 -
Lja1g2002 822 Pfam Protein tyrosine and serine/threonine kinase 510 783 IPR001245 GO:0004672|GO:0006468
Lja1g2002 822 SUPERFAMILY Protein kinase-like (PK-like) 479 784 IPR011009 -
Lja1g2002 822 ProSitePatterns Protein kinases ATP-binding region signature. 112 141 IPR017441 GO:0005524
Lja1g2002 822 ProSiteProfiles Protein kinase domain profile. 504 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2002 822 PANTHER - 1 821 - -
Lja1g2002 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Lja1g2002 822 SMART serkin_6 106 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2002 822 ProSiteProfiles Protein kinase domain profile. 106 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2002 822 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 1 821 - -
Lja1g2002 822 Gene3D Transferase(Phosphotransferase) domain 1 587 812 - -
Lja1g2002 822 Gene3D Phosphorylase Kinase; domain 1 464 580 - -
Lja1g2002 822 Gene3D Phosphorylase Kinase; domain 1 78 183 - -
Lja1g2002 822 Gene3D Transferase(Phosphotransferase) domain 1 184 404 - -
Lja1g2002 822 Pfam Protein kinase domain 107 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2002 Lja-Chr1 23292308 23295008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2002 494 790 Receptor kinase-like Gene Family AT3G53810 36.304 1.13e-51 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja1g2002 Pkinase 3.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2002 - - gmx:100796108 1363.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4572 3 87594276 87596948 Lja1g2002 1 23292308 23295008 PCT