Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1997 ATGGGAGAATGTGTGGATACAGGGGAATTTGGTTCTGGTTTTGGTAAGAAACGAAAGAGAAAATCGGCAGAGCTTATTGTAATCGGTGAAAGTGACGATGATAATGGGACTGAATTGGGTAAACAGGTGCCTGTGCACGGTGTTGATGTTAAACAAGAAGAACAAGACATGGGTGTGGATGATAAAGGTAAAAAACATGTTGTGGTTGTGAGTAGTTCAGAAAATGAAGACAGTGGGAGTGATTCTGAGAAGAATGGATTTCAGGGTTTTGTTGGTGGTGGAGAGGGAGACAAGAGTGACAGAGGTGAAAAGTGTTCTGAATCTGACGACCAAGGTCCAAATTTTCACAGTGATGGGTGTGGTTGGGCACCTAAAGAGCCGATTGTAATTAATTTTGATGGAAATAATCTGAGTGAGGATGAAAGTAGTGAGGCTCAAAGTGGTTCAGCTGGTGATGAAGATGTTGATGATGATATTGGATCTTCCTCTGAGAGTGAGGATGAAAACTCCAGTGATGAGGATTTTAGAGCTGAGGAGGTGTCAGGTTCAAACTGCGAGTTTTCTTCGTCTGATGAGTCTTCCTCTTATGATGATGACAATGAGAAGCGGCTGCGGCCGGGTAGACCTAGGTATTCAGGATGTTCTAGGCCTTGTAATGATCAAGCGCATGAGGAGGATAAGAAGAAACAAGATAGCTCTAGATCTCATCATAATGTGTTGTTACGAAGAAGGACAAGAGATTCAACAAAGGTCGATAACAGTGAGAGGGTTGATAATAGTGAGAGAAATAGTCCCATTGCTGATGCTAGTGACAGTGTGATTGGGGATCTTGGTACTCAGGGAGGCGGAGAAGAGCATCATGATAAAAAGGGGATTGAAGAAAAGGATGATGATACTCATCAGGTAGATACCCTGCTGCAAGCTTATGAGGAGAAACCCCTATTGAAGCGGAACTTTATGGAGGATGAACCATTGGAAAAATCGGAGTCTAAGGAAGAGTTGGACTGTTTGTGGGCTGAGATGGATTTGGGGCTTAGATCAGATGACGAAGGTTCAGTTGTTAGAATCGCGTCTTCATTGCCAAGAAAAAAAGACAGGATGGGAAGAGAGGTTTGCAAAGGTCGAATTAACACAAGCAATCATGAAAAGAAAGCACGGGTGGATAAAAGATTTGGTAACAAAGATGGGCATCACAGGGTCCATACGATGCCATTGAAGCGGAAGGAGCAACAGTTGCTTGATCTCCTTGCTGAGTGCCTTTTGGGAAAGCAAAAGGAAACCAAGGGAGATAGAAATGGGTTTGAAGAGCATGATGATGATAATCCTCAGGTAGATACTCGGTCACCAGCTTATGGGGAGAAACCCCCATTGAAGTGGAACATTAAGGAGGCTGAACCATTGAAAAAATCGGCGTCTGAGCAAGAGCTGGATACTTTGTGGGCTGAGATGGATTTCCAGCTTATATTAGAAGAAATCAATTCCCCGGTTGACATTATAGGGAATAATGAAGGAAGGGAAAATCAAACCTTTATTTGTAAGCACGACTTTCGCATTGACGATGAGATTGGAGAAATTTGCAGAAAATGTTCTTGGGTTGCCAATGAGATAAAATATGTCTGGCCACCGGTGGTGGATGAATATCCTTCCAAAGGGTCACGGAATAGGGTGTCATCTGGTGTAGATACCGTCTTGCACTCTTATGATGATCGGTTCAATATTTCTGAGGGTGACAAAGACGGTGTTTCCCCTCAAAATGAAGGCACAGTTTGGGACCTGATTCCTGATATCAAACAAAGCCTCTATCCTCATCAACAAGCAGGCTTTAAGTTCATTTGGACGAATTTGGCCCGGACCATGAACCTTCACAATCTGAAGACTGCTGATCCTTCCAGTGCGGGTGGGTGCATTATTTCCCATGCGCCTGGAACCGGAAAGACAAGGTTAACAATCGTGTTTCTTCAGACATATCTGGAAGTGTTTCCGAAATGCCGACCAGTAATTATTGCTCCTGCTATTATATTGCGTACTTGGGAAGATGAGTTCAAAAAATGGAACATAGGTGTTCCGTTCCACAACCTCAACACCCCTGAACTATCTGGAAAAGAGCACATTGATGCCACTAATGAGGTTGACTGCTCTGGATCACCGCATAAGAATAAGGATGCCGTTCGTATGGCGAAGTTGTATTCATGGTTCAAAGAGAAGAGCATTCTGGGAATCAGCTACCAATTGTTCGAGAAGCTTGCAGGGGGAAATTCCAAAAAGAAAAACAGGAACATGAGAAAAGAGAAGAAGCATGCGAGTATGAAAGAGAACCCTGAACCTGAAACCAGTGTTCTGGGAAAAGTTCTGCTTGAAGTTCCTGGTTTACTAGTTCTAGATGAAGGGCACACGCCTAGAAATCAGCGCAGTTCTATTTGGAATGTTCTGTCGAGAATTCAAACTCAGAAGCGGATCATTCTCTCTGGCACTCCTTTCCAGAACAATTTTGTGGAACTCTACAACACTCTTTGCTTGGTGAAACCATCCTTTCCTGACATGATACCGCCGGAACTCAAAAAGTTCTGTCAGAGTAGACTAATGCAGGAAAGGAAAGCATCTCAAGATTTCACTTGGGAACAGGTCTCTCCGGGAAACATCACAACAGGAAATCCTTCTGATGTAAAGATTAAGCAGTTGAAAGGGTTGATGGATCCTTTCGTTCACGTTCACAAAGGAAGCATTCTTCAAGAAAACCTTCCTGGTCTGAGGGACTGTGTGCTGATTTTGAAGCCTGGCAGTTTGGAGAAAGAAATTCTAGAGAGCATTGAAAGTTCTCAGAGCACCTTCAACTTCGAACGCAAGTTAGCTCTTGCATCTGTCCATCCATGGCTTTTCCTCTGCTGTACTCTGACCAAGAAAGAAAAATCTGTTGTCGACAGGTACCAGTTGGAAAGACTTCAGTTGAGCCCTCATGAAGGTGCCAAAACCAGATTTTTGGTGGAGTTTGTGAGGCTGTGTGACTCGGTAGGTGAGAAAGTTCTTGTGTTTAGCCAATTCATTGATCCTTTGAAATTAATCATGGACCAACTCAAGTCACATTTAAAGTGGGATGAGGGGAAGGAAGTGTTGTATATGTCTGGCGAGCTTGGTCAAAAGAAAAAGCAGCACTTGATTCATGGTTTCAATAGTGAAGATAGCCAAGCAAAGGTACTGCTTGCATCCACAAATGCGTGCTCAGAGGGAATTAACTTAGTTGGAGCTTCTAGAGTCGTGCTCCTGGATGTTGTGTGGAATCCCTCAGTGGAAAGGCAAGCCATTAGCCGAGCGTATAGACTCGGCCAAAAGAAGTTTGTTTACACATACCACCTCATCACACAAGACACCGCTGAATTTGCAAAGTATTGTAAGCAGGCTGAAAAGGACCGGTTATCTGAACTGGTTTTCTCTGCTCAACATGCTGAAGATGATAAAACAAAGATTGGAGCAGTAAATTTAAATGATAAAGTTCTTGACACAATGATTGAGCATGAGAAACTCAAGGACTTGTTTGTAAAATGTGTGGTACAACCCAAGGAAAGAGATTTGATTAAGAGTCCTGGCTCTTGA 3588 0.4326 MGECVDTGEFGSGFGKKRKRKSAELIVIGESDDDNGTELGKQVPVHGVDVKQEEQDMGVDDKGKKHVVVVSSSENEDSGSDSEKNGFQGFVGGGEGDKSDRGEKCSESDDQGPNFHSDGCGWAPKEPIVINFDGNNLSEDESSEAQSGSAGDEDVDDDIGSSSESEDENSSDEDFRAEEVSGSNCEFSSSDESSSYDDDNEKRLRPGRPRYSGCSRPCNDQAHEEDKKKQDSSRSHHNVLLRRRTRDSTKVDNSERVDNSERNSPIADASDSVIGDLGTQGGGEEHHDKKGIEEKDDDTHQVDTLLQAYEEKPLLKRNFMEDEPLEKSESKEELDCLWAEMDLGLRSDDEGSVVRIASSLPRKKDRMGREVCKGRINTSNHEKKARVDKRFGNKDGHHRVHTMPLKRKEQQLLDLLAECLLGKQKETKGDRNGFEEHDDDNPQVDTRSPAYGEKPPLKWNIKEAEPLKKSASEQELDTLWAEMDFQLILEEINSPVDIIGNNEGRENQTFICKHDFRIDDEIGEICRKCSWVANEIKYVWPPVVDEYPSKGSRNRVSSGVDTVLHSYDDRFNISEGDKDGVSPQNEGTVWDLIPDIKQSLYPHQQAGFKFIWTNLARTMNLHNLKTADPSSAGGCIISHAPGTGKTRLTIVFLQTYLEVFPKCRPVIIAPAIILRTWEDEFKKWNIGVPFHNLNTPELSGKEHIDATNEVDCSGSPHKNKDAVRMAKLYSWFKEKSILGISYQLFEKLAGGNSKKKNRNMRKEKKHASMKENPEPETSVLGKVLLEVPGLLVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPPELKKFCQSRLMQERKASQDFTWEQVSPGNITTGNPSDVKIKQLKGLMDPFVHVHKGSILQENLPGLRDCVLILKPGSLEKEILESIESSQSTFNFERKLALASVHPWLFLCCTLTKKEKSVVDRYQLERLQLSPHEGAKTRFLVEFVRLCDSVGEKVLVFSQFIDPLKLIMDQLKSHLKWDEGKEVLYMSGELGQKKKQHLIHGFNSEDSQAKVLLASTNACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITQDTAEFAKYCKQAEKDRLSELVFSAQHAEDDKTKIGAVNLNDKVLDTMIEHEKLKDLFVKCVVQPKERDLIKSPGS* 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1997 1195 MobiDBLite consensus disorder prediction 427 456 - -
Lja1g1997 1195 MobiDBLite consensus disorder prediction 281 302 - -
Lja1g1997 1195 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 376 1191 - -
Lja1g1997 1195 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 995 1148 IPR001650 -
Lja1g1997 1195 SMART ultradead3 596 855 IPR014001 -
Lja1g1997 1195 CDD SF2_C_SNF 988 1118 - -
Lja1g1997 1195 Pfam SNF2-related domain 616 940 IPR000330 GO:0005524|GO:0140658
Lja1g1997 1195 MobiDBLite consensus disorder prediction 427 444 - -
Lja1g1997 1195 MobiDBLite consensus disorder prediction 753 775 - -
Lja1g1997 1195 Gene3D - 918 1186 IPR027417 -
Lja1g1997 1195 SMART helicmild6 1022 1107 IPR001650 -
Lja1g1997 1195 MobiDBLite consensus disorder prediction 146 174 - -
Lja1g1997 1195 MobiDBLite consensus disorder prediction 1 302 - -
Lja1g1997 1195 MobiDBLite consensus disorder prediction 47 81 - -
Lja1g1997 1195 MobiDBLite consensus disorder prediction 96 111 - -
Lja1g1997 1195 MobiDBLite consensus disorder prediction 12 39 - -
Lja1g1997 1195 MobiDBLite consensus disorder prediction 219 262 - -
Lja1g1997 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 588 856 IPR027417 -
Lja1g1997 1195 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 626 843 IPR014001 -
Lja1g1997 1195 Pfam Helicase conserved C-terminal domain 995 1107 IPR001650 -
Lja1g1997 1195 Gene3D - 572 876 IPR038718 -
Lja1g1997 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 1146 IPR027417 -
Lja1g1997 1195 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 376 1191 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1997 Lja-Chr1 23212935 23223938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1997 1004 1137 RAD5 or RAD16-like Gene Family AT5G43530 41.045 3.00e-19 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g1997 SNF2_N 9.1e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1997 K10875 - gmx:100812737 951.814