Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g1997 | ATGGGAGAATGTGTGGATACAGGGGAATTTGGTTCTGGTTTTGGTAAGAAACGAAAGAGAAAATCGGCAGAGCTTATTGTAATCGGTGAAAGTGACGATGATAATGGGACTGAATTGGGTAAACAGGTGCCTGTGCACGGTGTTGATGTTAAACAAGAAGAACAAGACATGGGTGTGGATGATAAAGGTAAAAAACATGTTGTGGTTGTGAGTAGTTCAGAAAATGAAGACAGTGGGAGTGATTCTGAGAAGAATGGATTTCAGGGTTTTGTTGGTGGTGGAGAGGGAGACAAGAGTGACAGAGGTGAAAAGTGTTCTGAATCTGACGACCAAGGTCCAAATTTTCACAGTGATGGGTGTGGTTGGGCACCTAAAGAGCCGATTGTAATTAATTTTGATGGAAATAATCTGAGTGAGGATGAAAGTAGTGAGGCTCAAAGTGGTTCAGCTGGTGATGAAGATGTTGATGATGATATTGGATCTTCCTCTGAGAGTGAGGATGAAAACTCCAGTGATGAGGATTTTAGAGCTGAGGAGGTGTCAGGTTCAAACTGCGAGTTTTCTTCGTCTGATGAGTCTTCCTCTTATGATGATGACAATGAGAAGCGGCTGCGGCCGGGTAGACCTAGGTATTCAGGATGTTCTAGGCCTTGTAATGATCAAGCGCATGAGGAGGATAAGAAGAAACAAGATAGCTCTAGATCTCATCATAATGTGTTGTTACGAAGAAGGACAAGAGATTCAACAAAGGTCGATAACAGTGAGAGGGTTGATAATAGTGAGAGAAATAGTCCCATTGCTGATGCTAGTGACAGTGTGATTGGGGATCTTGGTACTCAGGGAGGCGGAGAAGAGCATCATGATAAAAAGGGGATTGAAGAAAAGGATGATGATACTCATCAGGTAGATACCCTGCTGCAAGCTTATGAGGAGAAACCCCTATTGAAGCGGAACTTTATGGAGGATGAACCATTGGAAAAATCGGAGTCTAAGGAAGAGTTGGACTGTTTGTGGGCTGAGATGGATTTGGGGCTTAGATCAGATGACGAAGGTTCAGTTGTTAGAATCGCGTCTTCATTGCCAAGAAAAAAAGACAGGATGGGAAGAGAGGTTTGCAAAGGTCGAATTAACACAAGCAATCATGAAAAGAAAGCACGGGTGGATAAAAGATTTGGTAACAAAGATGGGCATCACAGGGTCCATACGATGCCATTGAAGCGGAAGGAGCAACAGTTGCTTGATCTCCTTGCTGAGTGCCTTTTGGGAAAGCAAAAGGAAACCAAGGGAGATAGAAATGGGTTTGAAGAGCATGATGATGATAATCCTCAGGTAGATACTCGGTCACCAGCTTATGGGGAGAAACCCCCATTGAAGTGGAACATTAAGGAGGCTGAACCATTGAAAAAATCGGCGTCTGAGCAAGAGCTGGATACTTTGTGGGCTGAGATGGATTTCCAGCTTATATTAGAAGAAATCAATTCCCCGGTTGACATTATAGGGAATAATGAAGGAAGGGAAAATCAAACCTTTATTTGTAAGCACGACTTTCGCATTGACGATGAGATTGGAGAAATTTGCAGAAAATGTTCTTGGGTTGCCAATGAGATAAAATATGTCTGGCCACCGGTGGTGGATGAATATCCTTCCAAAGGGTCACGGAATAGGGTGTCATCTGGTGTAGATACCGTCTTGCACTCTTATGATGATCGGTTCAATATTTCTGAGGGTGACAAAGACGGTGTTTCCCCTCAAAATGAAGGCACAGTTTGGGACCTGATTCCTGATATCAAACAAAGCCTCTATCCTCATCAACAAGCAGGCTTTAAGTTCATTTGGACGAATTTGGCCCGGACCATGAACCTTCACAATCTGAAGACTGCTGATCCTTCCAGTGCGGGTGGGTGCATTATTTCCCATGCGCCTGGAACCGGAAAGACAAGGTTAACAATCGTGTTTCTTCAGACATATCTGGAAGTGTTTCCGAAATGCCGACCAGTAATTATTGCTCCTGCTATTATATTGCGTACTTGGGAAGATGAGTTCAAAAAATGGAACATAGGTGTTCCGTTCCACAACCTCAACACCCCTGAACTATCTGGAAAAGAGCACATTGATGCCACTAATGAGGTTGACTGCTCTGGATCACCGCATAAGAATAAGGATGCCGTTCGTATGGCGAAGTTGTATTCATGGTTCAAAGAGAAGAGCATTCTGGGAATCAGCTACCAATTGTTCGAGAAGCTTGCAGGGGGAAATTCCAAAAAGAAAAACAGGAACATGAGAAAAGAGAAGAAGCATGCGAGTATGAAAGAGAACCCTGAACCTGAAACCAGTGTTCTGGGAAAAGTTCTGCTTGAAGTTCCTGGTTTACTAGTTCTAGATGAAGGGCACACGCCTAGAAATCAGCGCAGTTCTATTTGGAATGTTCTGTCGAGAATTCAAACTCAGAAGCGGATCATTCTCTCTGGCACTCCTTTCCAGAACAATTTTGTGGAACTCTACAACACTCTTTGCTTGGTGAAACCATCCTTTCCTGACATGATACCGCCGGAACTCAAAAAGTTCTGTCAGAGTAGACTAATGCAGGAAAGGAAAGCATCTCAAGATTTCACTTGGGAACAGGTCTCTCCGGGAAACATCACAACAGGAAATCCTTCTGATGTAAAGATTAAGCAGTTGAAAGGGTTGATGGATCCTTTCGTTCACGTTCACAAAGGAAGCATTCTTCAAGAAAACCTTCCTGGTCTGAGGGACTGTGTGCTGATTTTGAAGCCTGGCAGTTTGGAGAAAGAAATTCTAGAGAGCATTGAAAGTTCTCAGAGCACCTTCAACTTCGAACGCAAGTTAGCTCTTGCATCTGTCCATCCATGGCTTTTCCTCTGCTGTACTCTGACCAAGAAAGAAAAATCTGTTGTCGACAGGTACCAGTTGGAAAGACTTCAGTTGAGCCCTCATGAAGGTGCCAAAACCAGATTTTTGGTGGAGTTTGTGAGGCTGTGTGACTCGGTAGGTGAGAAAGTTCTTGTGTTTAGCCAATTCATTGATCCTTTGAAATTAATCATGGACCAACTCAAGTCACATTTAAAGTGGGATGAGGGGAAGGAAGTGTTGTATATGTCTGGCGAGCTTGGTCAAAAGAAAAAGCAGCACTTGATTCATGGTTTCAATAGTGAAGATAGCCAAGCAAAGGTACTGCTTGCATCCACAAATGCGTGCTCAGAGGGAATTAACTTAGTTGGAGCTTCTAGAGTCGTGCTCCTGGATGTTGTGTGGAATCCCTCAGTGGAAAGGCAAGCCATTAGCCGAGCGTATAGACTCGGCCAAAAGAAGTTTGTTTACACATACCACCTCATCACACAAGACACCGCTGAATTTGCAAAGTATTGTAAGCAGGCTGAAAAGGACCGGTTATCTGAACTGGTTTTCTCTGCTCAACATGCTGAAGATGATAAAACAAAGATTGGAGCAGTAAATTTAAATGATAAAGTTCTTGACACAATGATTGAGCATGAGAAACTCAAGGACTTGTTTGTAAAATGTGTGGTACAACCCAAGGAAAGAGATTTGATTAAGAGTCCTGGCTCTTGA | 3588 | 0.4326 | MGECVDTGEFGSGFGKKRKRKSAELIVIGESDDDNGTELGKQVPVHGVDVKQEEQDMGVDDKGKKHVVVVSSSENEDSGSDSEKNGFQGFVGGGEGDKSDRGEKCSESDDQGPNFHSDGCGWAPKEPIVINFDGNNLSEDESSEAQSGSAGDEDVDDDIGSSSESEDENSSDEDFRAEEVSGSNCEFSSSDESSSYDDDNEKRLRPGRPRYSGCSRPCNDQAHEEDKKKQDSSRSHHNVLLRRRTRDSTKVDNSERVDNSERNSPIADASDSVIGDLGTQGGGEEHHDKKGIEEKDDDTHQVDTLLQAYEEKPLLKRNFMEDEPLEKSESKEELDCLWAEMDLGLRSDDEGSVVRIASSLPRKKDRMGREVCKGRINTSNHEKKARVDKRFGNKDGHHRVHTMPLKRKEQQLLDLLAECLLGKQKETKGDRNGFEEHDDDNPQVDTRSPAYGEKPPLKWNIKEAEPLKKSASEQELDTLWAEMDFQLILEEINSPVDIIGNNEGRENQTFICKHDFRIDDEIGEICRKCSWVANEIKYVWPPVVDEYPSKGSRNRVSSGVDTVLHSYDDRFNISEGDKDGVSPQNEGTVWDLIPDIKQSLYPHQQAGFKFIWTNLARTMNLHNLKTADPSSAGGCIISHAPGTGKTRLTIVFLQTYLEVFPKCRPVIIAPAIILRTWEDEFKKWNIGVPFHNLNTPELSGKEHIDATNEVDCSGSPHKNKDAVRMAKLYSWFKEKSILGISYQLFEKLAGGNSKKKNRNMRKEKKHASMKENPEPETSVLGKVLLEVPGLLVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPPELKKFCQSRLMQERKASQDFTWEQVSPGNITTGNPSDVKIKQLKGLMDPFVHVHKGSILQENLPGLRDCVLILKPGSLEKEILESIESSQSTFNFERKLALASVHPWLFLCCTLTKKEKSVVDRYQLERLQLSPHEGAKTRFLVEFVRLCDSVGEKVLVFSQFIDPLKLIMDQLKSHLKWDEGKEVLYMSGELGQKKKQHLIHGFNSEDSQAKVLLASTNACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITQDTAEFAKYCKQAEKDRLSELVFSAQHAEDDKTKIGAVNLNDKVLDTMIEHEKLKDLFVKCVVQPKERDLIKSPGS* | 1196 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g1997 | 1195 | MobiDBLite | consensus disorder prediction | 427 | 456 | - | - | |
| Lja1g1997 | 1195 | MobiDBLite | consensus disorder prediction | 281 | 302 | - | - | |
| Lja1g1997 | 1195 | PANTHER | SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 | 376 | 1191 | - | - | |
| Lja1g1997 | 1195 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 995 | 1148 | IPR001650 | - | |
| Lja1g1997 | 1195 | SMART | ultradead3 | 596 | 855 | IPR014001 | - | |
| Lja1g1997 | 1195 | CDD | SF2_C_SNF | 988 | 1118 | - | - | |
| Lja1g1997 | 1195 | Pfam | SNF2-related domain | 616 | 940 | IPR000330 | GO:0005524|GO:0140658 | |
| Lja1g1997 | 1195 | MobiDBLite | consensus disorder prediction | 427 | 444 | - | - | |
| Lja1g1997 | 1195 | MobiDBLite | consensus disorder prediction | 753 | 775 | - | - | |
| Lja1g1997 | 1195 | Gene3D | - | 918 | 1186 | IPR027417 | - |
Showing 1 to 10 of 23 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information