Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1990 ATGACTTCTAATCTCAACCATTGTGTTAATGAATCAAAGCCAATCCACTTTTTCAAAATCATGCTCCCCGAAACCATTTTGCAAGGAAAGCTGAGGATTCCTGGAAAGTTTGTGAGGGAACATGGAAAATGCTTGTCCAACACAATGTTTCTTAAGCTTCCAAATGGTGCTGAATGGGAAGTGAATTTGGAGAAACGTGATGGTAGCATTTGGTTTCACCATGGTTGGAAAGAGTTTGCGGAATATCATTCTCTAGCACATGGGCATTTATTGGTTTTCAGGTATGATGGAAGATCCTATTTTCATGTACTCATCTTTGGTGTGAGTGCAATGGAGATAGATTACCCTTCTGTGAACAAGGTTGATCGTAAAAGAGCCAACAATTGTGAAGTTGAACAACGTAAGGCACGGAGAACAAATGGAAATGACAAAAATCAGAGCAATTTCAATTTCCCTGTTTTAGATATTTTGATGAATCCCAATGAAGGGAAGAGAAAAATTGAGCATCATACTAAAAGGTCACCCATAAGAAATCGTGATGCTCATGAAGCTGCCGGCCCTGCTGATTCTTGCATGCTAACAATAAAAAGAAGCCACTGCATGAGCCTGCCAAGAGGATCACTCAAGGGCTATGTGAAACCTGGAGCACAAAATGTTACACTGCTGGTTGGGGACAAAGAATGGAAGGTTAATATGATCTATTACCCACGCAAATCTTCTACTTGGCTTTCTGCAGGTTGGCCAGTATTTGCAAGGGAAAACAACTTAAAAGTAGGAGATGTCTGCTTGTTCAAGGTAGTAAAAGGTAGCGGTGACATGGTGGTGAAGGTTTCCATACGTCATAAGAAAGGAATGTCATAA 861 0.4053 MTSNLNHCVNESKPIHFFKIMLPETILQGKLRIPGKFVREHGKCLSNTMFLKLPNGAEWEVNLEKRDGSIWFHHGWKEFAEYHSLAHGHLLVFRYDGRSYFHVLIFGVSAMEIDYPSVNKVDRKRANNCEVEQRKARRTNGNDKNQSNFNFPVLDILMNPNEGKRKIEHHTKRSPIRNRDAHEAAGPADSCMLTIKRSHCMSLPRGSLKGYVKPGAQNVTLLVGDKEWKVNMIYYPRKSSTWLSAGWPVFARENNLKVGDVCLFKVVKGSGDMVVKVSIRHKKGMS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1990 286 Pfam B3 DNA binding domain 17 106 IPR003340 GO:0003677
Lja1g1990 286 Pfam B3 DNA binding domain 197 277 IPR003340 GO:0003677
Lja1g1990 286 CDD B3_DNA 197 277 IPR003340 GO:0003677
Lja1g1990 286 ProSiteProfiles B3 DNA-binding domain profile. 201 283 IPR003340 GO:0003677
Lja1g1990 286 Gene3D - 134 283 IPR015300 -
Lja1g1990 286 PANTHER B3 DOMAIN-CONTAINING 11 281 - -
Lja1g1990 286 Gene3D - 8 110 IPR015300 -
Lja1g1990 286 SMART B3_2 191 283 IPR003340 GO:0003677
Lja1g1990 286 SMART B3_2 17 109 IPR003340 GO:0003677
Lja1g1990 286 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Lja1g1990 286 CDD B3_DNA 16 106 IPR003340 GO:0003677
Lja1g1990 286 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 281 - -
Lja1g1990 286 SUPERFAMILY DNA-binding pseudobarrel domain 197 279 IPR015300 -
Lja1g1990 286 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1990 Lja-Chr1 23086448 23088514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1990 11 165 B3 DNA Binding Superfamily AT4G01580 34.356 3.68e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g1990 B3 2.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1990 - - aprc:113849508 316.62