Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1981 ATGGAAAATGATGCTCAAGAAAACTTGTTTGGCACATCCTCCTCCTCCTCATCAACAACACCAACAACATCTTCTACTTCCAATTCAAATTCATGCACCAAGAAAAGCTCCAAAAGAAGGGATGCAATTGCAGACTCAGAAAATGACAAAAAAAGGAAGAGAAGTGAGAATGAAACTAAACACCCCACTTACAGAGGAGTGAGAATGAGAGCTTGGGGAAAATGGGTGTCTGAGATCAGGGAGCCAAGAAAGAAATCAAGAATATGGCTTGGAACATACCCTAGTGCTGAAATGGCAGCAAGGGCACATGATGTGGCAGCTTTAGCTATCAAAGGCCATTCAGCTTTCCTCAATTTCCCTGAATTGGCTCAGGATCTTCCAAGACCTCTCAGCACATCTCCCAAGGAGATTCAAGCTGCTGCTTCAGAGGCAGCAGCCAGTGTCGTTTCCAGTGTTTTCAGAACCGGACCGGTAATTGAACCGGTATTTTCAGAGGCTAAGCAATGTCAAGCTGAGGCTGAACAAAGCCAAGGAGAACAAGCTTCATCTTCAACTCTTTCCATGGAGAGTACTCTGGAGTCTTCAAGTAATTCTGATTCTCCCTCTACTGCAGATGATGATGATGCACTGTTTGACCTGCCAGATCTTTTCACTGATGGAAGCAATGGACTTCTCTCTTATTCTTCTTCTTTGTATTTATGTTCTGTTGAAACTGGATTCAAGCTTGAGGAGCAACTTTTGTGGGAGAACTACTTGTAA 759 0.4348 MENDAQENLFGTSSSSSSTTPTTSSTSNSNSCTKKSSKRRDAIADSENDKKRKRSENETKHPTYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPSAEMAARAHDVAALAIKGHSAFLNFPELAQDLPRPLSTSPKEIQAAASEAAASVVSSVFRTGPVIEPVFSEAKQCQAEAEQSQGEQASSSTLSMESTLESSSNSDSPSTADDDDALFDLPDLFTDGSNGLLSYSSSLYLCSVETGFKLEEQLLWENYL* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1981 252 MobiDBLite consensus disorder prediction 1 67 - -
Lja1g1981 252 PANTHER ETHYLENE RESPONSE FACTOR 8 251 - -
Lja1g1981 252 MobiDBLite consensus disorder prediction 170 207 - -
Lja1g1981 252 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Lja1g1981 252 Pfam AP2 domain 62 113 IPR001471 GO:0003700|GO:0006355
Lja1g1981 252 MobiDBLite consensus disorder prediction 1 33 - -
Lja1g1981 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 251 - -
Lja1g1981 252 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
Lja1g1981 252 MobiDBLite consensus disorder prediction 34 65 - -
Lja1g1981 252 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Lja1g1981 252 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Lja1g1981 252 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Lja1g1981 252 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Lja1g1981 252 MobiDBLite consensus disorder prediction 170 204 - -
Lja1g1981 252 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1981 Lja-Chr1 22992878 22994234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1981 51 247 AP2-EREBP Transcription Factor Family AT2G44940 52.404 1.54e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g1981 AP2 7.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1981 - - gmx:100792964 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1981 1 22992878 22994234 Lja1g1981 1 22992878 22994234 ECH