Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1980 ATGGGGAGTATGGGTGACTCAGACAGAAAACGGCGTCACTTTAGCTCCTTATCTCCTACACCTGCAGCTGCTGCAACTGCCAAGAAGCTTCCCTTTTTGCCCATTTCTGAAGACAAAAAGCTTGATATTGCTGTACTCCAGTATCAAAATCAAAAGCTTTTACAGAAATTGGAAACCCAGAAGTTAGAATATGCAGCTCTTGAGAATAAACTTTCTCAACTGAATGAGAGTCAACATTCATATGATTCTGCTTTAACAGTGGTCAAGAAGTCTTGGGAGCAGATGGTTAATGATTTAGAGTCAAGTTCTGAAGGCACACGAGAGTCTAGCTGCAAATCAGATTCCAGATTTGCATCAGTTATGAATGATTGTAGTTCATCTACTGTTCAGGATGTTTTTCTTAGCCGATTAATGCAAACTGGTGCAACTGAAAGTTCCTCCACGTATCGCTTTGCAAACCAGATGGAAGAGCATAATGAAATTACTGCTGAAAAAGCTAAAAGCATTTTAAAAAATGTAGTGACAGCTACTAATAACCTTTGGGGTATGAAGGATGGATTGCATACTGCATTACTGAAAAAGCTTCCAGGAGATGTTTCATGTCGGCAGAAGTTGTCCGCTGATCTAGAGGTGGAAGTTAAGAACCTGAGATTGGCGTTCAGTGAACTTCACTTGAAGCACAAGTCTTTGGCAAGTGAGTTACAATTTCAGAAAGATCATGATGCCAAAAATAAAGCCGATCTTAAGCGATTAAAAGGGGAACTAGAAAGCACGATTGCAGAGTTGGAAGAAAGCAATCACAAACTTGCAACGCTGAAGGAAGAGAGGGATGCAGCAAAAGGGGTAGTTCTCCCTGTGTTAAATGTTGGAAATGCTCAGACTCCCAACGATAAGATCAGAGACAAGCAAAAGGATTTGCAAGATATGGAATCTACTCTGAAGGAGCTATTGGACCAAGGCTCAACTCGATTAGTGGAACTGAAAACTCTTCATGAGGAAAGAATAAGAATATTACAGCAGTTGTGTGATCTACAGAACTCATTGAAGAATTTGAAGTGCATTACCTCTTCCAATGCTTACCAATTGGTTAGAGATCAGATAGAAAAATCAAAATCAGAAGTTCGGGAGTATCAGGCCTTATATGAGAAAGTACAGGTTGAGAAGGATAATCTTGCTTGGAGGGAGAGGGAGTGGTACATTAAAAATGACTTAGCAGATACTTTTCAAAGACCTGTAGCAGTTTCTGACTTGAGAGTGGCTGATATACGCTCCGAGATACAAAATAAGATAGATGCGAGAAATTTGATTGAAAATAAGCTGAAAGAGGAAGCAAGAGAACCAGGAAGGAAACAAATTATTGCAGAATTTAAATCTCTGCTTTCTTCATTTCCTGAGGAAATGGGATCTATGCAAAGTCAACTAAGTAAGTATAAAGAATCAGCTTCAGATATCCATTCTCTGCGTGCGGATGTGCAGTCTATTTCTAGTATTCTTGACAGGAAGGTAAAAGAATGTGATCTATTATTGGTTAAGTCTACTGGTCAACTAGCTGAGATAAAGAAGCTACATGCTATGGTTAAAGATTTGAGACAGACTGATAAGGAATTGAAGTTGTTTTGGGAAATGTTTAGACGTGAGACCATTGATTCAAGGGATGTCATGGAAGCAAGGGATGCAGAATACAGAGCATGGGCACATGTTCAAAGTTTGAAATCATCTCTTGATGAACACAACTTGGAACTTCGAGTTAAGATGGCTAATGAAGCAGAGGCCAGATCTCAACAAAATCTTGCTGCTGCTGAAGCTGAGATAGCAGACATGAGAAAGAAGTTGGAAGATTCTAAAAGGGAGATGTTAAAATTGTCGGATGTCTTGAGATCTAAAAATGAAGAAAATGAAGCTTTCTTATCCGAAATAGAGACTATAGGACAAGCCTATGATGACATGCAAACTCAAAACCAACATCTGTTACAGCAGATTACTGAGAGGGATGATTATAATATTAAGCTTGTTTTAGAAGGTGTAAGGGCGAGACAGAAGCAGGATTCTTTAATTATGGAGAAGCGAGTAATTGAACAAGAGATCCATCAAGCAAATGTATCCCTGAATCTATATGATGTGAAAGCTGCAAGAATTGAAGACCAGTTGAGGCATTTTTCAGATCAGATTCAAAAACTTACAGAAGATAAGCTTCAAAACTCTGTCACTTTTGAAAATACACAAAGAAGGCTTGCAGATATTAGATCATCAACTCAACAGGTTAGGGATACAGTGGTGGAACAGCAATGCAAAATTAGTAGTAGTCGAGTGACTTATATGGAGTTACAAGTGGAAGTCGAGAAAGAAAGGTTTGCCAAGAAAAGATTTGAGGAGGAGCTTGAGGTTGCTAGGAGAAAGTTTTCACGCCTTAAAGTACAGAATGAGGGTTCCTCGTTAACTGAAAAGCTTCAACAGGAATTGGGAGAATACAAGGAAATTATCAAGTGCAGTATCTGCCAAGACAGGACAAAGGAGGTGGTTATTACAAAATGCTACCACTTATTCTGCAACACGTGTATGCTGAAAGTTACTGGGAGTAGGCACCGCAAATGTCCACAGTGTGGTACAAGCTTTGGGGCTAATGATGTCAAGCCTGTTTATTTGTAA 2646 0.3927 MGSMGDSDRKRRHFSSLSPTPAAAATAKKLPFLPISEDKKLDIAVLQYQNQKLLQKLETQKLEYAALENKLSQLNESQHSYDSALTVVKKSWEQMVNDLESSSEGTRESSCKSDSRFASVMNDCSSSTVQDVFLSRLMQTGATESSSTYRFANQMEEHNEITAEKAKSILKNVVTATNNLWGMKDGLHTALLKKLPGDVSCRQKLSADLEVEVKNLRLAFSELHLKHKSLASELQFQKDHDAKNKADLKRLKGELESTIAELEESNHKLATLKEERDAAKGVVLPVLNVGNAQTPNDKIRDKQKDLQDMESTLKELLDQGSTRLVELKTLHEERIRILQQLCDLQNSLKNLKCITSSNAYQLVRDQIEKSKSEVREYQALYEKVQVEKDNLAWREREWYIKNDLADTFQRPVAVSDLRVADIRSEIQNKIDARNLIENKLKEEAREPGRKQIIAEFKSLLSSFPEEMGSMQSQLSKYKESASDIHSLRADVQSISSILDRKVKECDLLLVKSTGQLAEIKKLHAMVKDLRQTDKELKLFWEMFRRETIDSRDVMEARDAEYRAWAHVQSLKSSLDEHNLELRVKMANEAEARSQQNLAAAEAEIADMRKKLEDSKREMLKLSDVLRSKNEENEAFLSEIETIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLIMEKRVIEQEIHQANVSLNLYDVKAARIEDQLRHFSDQIQKLTEDKLQNSVTFENTQRRLADIRSSTQQVRDTVVEQQCKISSSRVTYMELQVEVEKERFAKKRFEEELEVARRKFSRLKVQNEGSSLTEKLQQELGEYKEIIKCSICQDRTKEVVITKCYHLFCNTCMLKVTGSRHRKCPQCGTSFGANDVKPVYL* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1980 881 SUPERFAMILY RING/U-box 821 880 - -
Lja1g1980 881 Coils Coil 709 729 - -
Lja1g1980 881 Coils Coil 43 77 - -
Lja1g1980 881 MobiDBLite consensus disorder prediction 1 15 - -
Lja1g1980 881 Coils Coil 299 319 - -
Lja1g1980 881 Coils Coil 245 282 - -
Lja1g1980 881 CDD RING-HC_BRE1_like 827 868 - -
Lja1g1980 881 Coils Coil 426 446 - -
Lja1g1980 881 ProSitePatterns Zinc finger RING-type signature. 844 853 IPR017907 -
Lja1g1980 881 ProSiteProfiles Zinc finger RING-type profile. 829 867 IPR001841 -
Lja1g1980 881 SMART ring_2 829 867 IPR001841 -
Lja1g1980 881 Coils Coil 360 387 - -
Lja1g1980 881 MobiDBLite consensus disorder prediction 1 24 - -
Lja1g1980 881 Pfam Zinc finger, C3HC4 type (RING finger) 828 869 - -
Lja1g1980 881 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 881 - -
Lja1g1980 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 881 IPR013083 -
Lja1g1980 881 Coils Coil 583 631 - -
Lja1g1980 881 Coils Coil 772 806 - -
Lja1g1980 881 PANTHER RING FINGER PROTEIN-RELATED 1 881 IPR013956 GO:0004842|GO:0010390
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1980 816 880 C3H Transcription Factor Family AT2G42030 30.303 2.63e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1980 K10696 - gmx:100790744 1329.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1980 1 22952789 22986923 Lja1g1980 1 22952789 22986923 ECH