Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1976 ATGAACCTGAGCTACGAACAGAGGCTTCAGGCCGTCGCCAGAATCGTTCTCGACGACGAAACCCGCACCAGCGACGCGCCTCCGTGCCAGGAAGAGCTTGGAATCAGGCCAACCCTTAAGCCCCACCAGGTGGAAGGGGTTTCGTGGCTCATACGGAGGTATAAACTGGGCGTCAACGTCATCCTCGGGGATGAGATGGGACTTGGAAAGACTTTGCAAGCTATCTCCTTTTTAAGCTATTTAAAAGTGTACCAGTTGTCACTTGGGCCATTTTTGGTTCTATGTCCTTTAAGCGTGACAGATGGTTGGGTGTCAGAGATACTCAAATTTGCGCCTAAACTGGAAGTCTTAAAATATGTTGGTGATAAAGAACACAGGCGCAGTCTACGCATGAAAATACACCAACATGTAACAAGGCAATCATCAAAACTTAACGTCATGTTGCCTTTTGATTTGCTGTTAACGACATATGACATTGCCCTGATGGATAAGGATTTTCTTGCGCAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAACGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGACCGCTATATCATGCCAAGACGGTTGTTGATGACTGGCACGCCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCATCTGTCTTTGGTTCACTGGATCAGTTCCTTTCTACATTCAAGGACATCAGTGATCTTACCTCAGTTCATGATTCTCCAAAGGTAAAAGATCGACTTCAAATCCTGAGAAGTGTATTGGGTGCCTTTATGCTTCGACGTACTAAATCAAAGCTTATGGAATGTGGAAATTTAGTGTTGCCACCTCTCACTGAGACAACTGTGTTCGTACCCCTTGTCAGCCTACAGAAAAAGGTCTATGTGTCAATATTGAGGAAGGAACTTCCTAAGCTACTTTCACTATCTTCTGGAACATCAAATCATCAATCACTACATAATATTGTGATACAACTGAGAAAGGCATGCAGCCATCCATATCTCTTTCCAGGTATTGAGCCTGAACCTTATGAAGAAGGTGAACATTTGGTTCAGGCCAGTGGTAAACTGCTGATTCTGGACCAACTTCTTCAGAAGCTACATTATTCTGGACACCGCGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAGGAAAGATTTTTGATACCCATGGCTGAGGAGCGGTTTTCTGCAATAAGAAGTTTCAGCAGCTCATCAGCTAATGTGGGCTTGAATCCTGGAAATGACCAAAATGGAGCTTTTGTCTTTATGATCTCAACAAGAGCTGGCGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTTTACGAGCAAGATTGGAACCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAACCACGTTTTGTGTATAAACCTTGTCACAGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGGAGCTGAGCCTCAATGTTACAGGTGATAATATTCTGGAACATGAAGATAAAGAAACCTCTGCTGTTGGAACTAGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGATCCCACTGAGGTTAATGATGGAAAACAAAAGGACATGGACTTACCAGATACTAATGCTATAGCTGATAGGGTGATTGCTATGCGTGATGAACAAATATTTAACAAGGATGACAAGAAATTCGAGATGAATCCTAGAAACATTTTAAAAGGTCGCGATCTTAAGGAAGTAGGTTCTGCTTCTCTCTCTATTGGTCTTGATCTTGATGAGGCTTCATATCTTTCTTGGGTTAAAAAATTTGAGGAAGTGTCTAAATCAACTTGCGACACAATCACGGACGTGAGGAGCAGAAGGAACTTAGATGAAGAGAAGAGTCTAAAAGTCGAGATTGCAAAGAAAATGGCAGAGGAAAAGAAGCTGTCTAAATGGGAAGCTCTTGGATATCATTCATTGAATGTTACAGACCCCATCAGTCCACCTGAAGAAGATATTATATCAACTACTGGTTCTGTTCATTTTGTATATGGAGATTGTACAGCTCCATCTAAAGTTTGTCCATCTGAACCTGCTATAATATTCAGCTGCGTTGACACCTCTGGACGCTGGGGCCGTGGTGGACTGTTCGATGCGCTGGTCAAACTTTCAACAAGCATCAGTGATGCATATGAACAGGCTTCTGAACATGGAGACCTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGGCTGTGATGAAAACAATATGGATGGTAATGCTCCTCCCAAGATGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAAAGTCCCTAGAGGTGAAATCTCACTTCTCGACTTGGAAAGCTGCTTGAAAAAGGCAGCGTTCTCAGCTGCTCAAAATTCCGCATCGATACACATGCCACGAATTGGTTATCAAGATGGATCTGATCGTTCCGAGTGGTACACCATAGAGCGGCTTCTAAGAAAATATGCTTCCATTTACGATATAAGCATCTATGTATATTATTATCGAAGATCACATCCAGGCTCCAGGTCTAGTTAA 2628 0.4235 MNLSYEQRLQAVARIVLDDETRTSDAPPCQEELGIRPTLKPHQVEGVSWLIRRYKLGVNVILGDEMGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEILKFAPKLEVLKYVGDKEHRRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGSLDQFLSTFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKLMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQERFLIPMAEERFSAIRSFSSSSANVGLNPGNDQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLELSLNVTGDNILEHEDKETSAVGTSDLKSIIFGLHMFDPTEVNDGKQKDMDLPDTNAIADRVIAMRDEQIFNKDDKKFEMNPRNILKGRDLKEVGSASLSIGLDLDEASYLSWVKKFEEVSKSTCDTITDVRSRRNLDEEKSLKVEIAKKMAEEKKLSKWEALGYHSLNVTDPISPPEEDIISTTGSVHFVYGDCTAPSKVCPSEPAIIFSCVDTSGRWGRGGLFDALVKLSTSISDAYEQASEHGDLHLGDLHLIRLEDGCDENNMDGNAPPKMVALAVVQSYNPRRKVPRGEISLLDLESCLKKAAFSAAQNSASIHMPRIGYQDGSDRSEWYTIERLLRKYASIYDISIYVYYYRRSHPGSRSS* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1976 875 SMART ultradead3 35 236 IPR014001 -
Lja1g1976 875 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 4 864 - -
Lja1g1976 875 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 228 IPR014001 -
Lja1g1976 875 Pfam Helicase conserved C-terminal domain 367 480 IPR001650 -
Lja1g1976 875 PANTHER HELICASE CHR10-RELATED 4 864 - -
Lja1g1976 875 Gene3D Leucine Aminopeptidase, subunit E, domain 1 695 873 IPR043472 -
Lja1g1976 875 SUPERFAMILY Macro domain-like 696 864 IPR043472 -
Lja1g1976 875 Pfam SNF2-related domain 56 346 IPR000330 GO:0005524|GO:0140658
Lja1g1976 875 CDD Macro_Poa1p-like_SNF2 695 856 - -
Lja1g1976 875 SMART helicmild6 396 480 IPR001650 -
Lja1g1976 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 524 IPR027417 -
Lja1g1976 875 CDD SF2_C_SNF 359 491 - -
Lja1g1976 875 Gene3D - 285 588 IPR027417 -
Lja1g1976 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 273 IPR027417 -
Lja1g1976 875 Gene3D - 12 284 IPR038718 -
Lja1g1976 875 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 527 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1976 Lja-Chr1 22671929 22685800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1976 19 539 RAD5 or RAD16-like Gene Family AT1G02670 24.879 1.87e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g1976 SNF2_N 5.7e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1976 K20092 - gmx:100797182 1353.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1976 1 22671929 22685800 Lja1g1976 1 22671929 22685800 ECH