Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1969 ATGGACTTTGGAGGGAACATGTTCTGTCTTAACGGTAACAGTAACGGTTTTGCTTGGGGGGACAATTCATGGGAAACCGCCACTACTTGCAACAACAGTTCAAGGCTATTCCACAACACTGGGGAGAGCTCCACCGTTAACCTCCATCAAGCTGACGGTGGTTTACGGCAGCAGCAGTTTCCCTACGGCGGAGATGGGTCCCACTCCCATGTGTACGCGGACCCGCATCTCACTTGCTTGAAGCTTGGGAAGAGGCAATACTTTGAGGATGCGAGTGGTGGTGGTGGAGATAAGAGGGGCAGAGGGTGCAACGGTGGTGGTGGGGTGAAGGCGGCGGCGAGGTGTCAGGTGGAGGGGTGCCACGTGGCGCTGGTGAACGCGAAGGAGTACCACAGGAGGCACAAGGTTTGTGAGATACATTCCAAGGCACCAAAAGTTGTGGTGATGGGGATGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAATTTGATGATTCAAAGAGGAGTTGTAGGAGGAGACTGGCAGGTCACAATGAGCGAAGAAGAAAGAGCTCACATGATTCTGTTGCAAGGAATTCTCCACAAGGAGAATGTGCTCTCTCTCTTCTGTCAACTAAGAGAGATTCTTGGCTTTCCCCTGCTGATCTCCCCACAAGATGCAGTGCTGCATTACGTGAATTGATCGCTGAAAACCGGGCAGCCAGCATGGCTAGGCAGTTTGTTTCAGACAGGGACTGGAATCTGCACCATCATGCAGTGGAAGACTTCAGGGAAATCCAACCTGAGTCCAATTATTTCCCACACCAGATGTTTCCTCAAACACAGTAA 843 0.5172 MDFGGNMFCLNGNSNGFAWGDNSWETATTCNNSSRLFHNTGESSTVNLHQADGGLRQQQFPYGGDGSHSHVYADPHLTCLKLGKRQYFEDASGGGGDKRGRGCNGGGGVKAAARCQVEGCHVALVNAKEYHRRHKVCEIHSKAPKVVVMGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSPQGECALSLLSTKRDSWLSPADLPTRCSAALRELIAENRAASMARQFVSDRDWNLHHHAVEDFREIQPESNYFPHQMFPQTQ* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1969 280 Pfam SBP domain 115 188 IPR004333 GO:0003677
Lja1g1969 280 SUPERFAMILY SBT domain 113 194 IPR036893 GO:0003677|GO:0005634
Lja1g1969 280 Gene3D - 106 176 IPR036893 GO:0003677|GO:0005634
Lja1g1969 280 MobiDBLite consensus disorder prediction 179 198 - -
Lja1g1969 280 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 45 280 - -
Lja1g1969 280 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 280 IPR044817 GO:0003677
Lja1g1969 280 ProSiteProfiles Zinc finger SBP-type profile. 112 189 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1969 Lja-Chr1 22569128 22574311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1969 80 273 SBP-box Gene Family AT3G57920 43.077 1.50e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja1g1969 SBP 9.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1969 - - gmx:100806582 386.341