Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1965 ATGAGCCAGTGTGTTCCCAGCTGGGATATCGATGACAACCCACCACCCCCAAGAGCCTCTCTTCGTTCCAACTCCAATTCAACTGCCCCTGATGTCTCCATGTTAGACTATGATGTTGCAGAGCTTACATGGGAAAACGGACAACCTTCCATGCATGGCTTAGGGCTGCCGCGAGTGCCGGTGAAATCATCCACTACCACCACCAATACCGCTCCTCACAAGGAGGCATGGGAAAAGCCTCGTGGTAGTGGCACCTTGGAGTCTATAGTGAACCAAGCCACTACCTTACCCCAGTGGGGTAAGTCATCTTTTGTTGGCGGTGACAATATTGGTGGCGTTTATGGGAACGTGCTAGTCCCATGGCTTAACCCACACCGCGCTGCGGCCATCGCAGCTGCCAGCGCCTCCAACACCATGACCATGGATGCGCTCGTGCCCTGCACGAATCGTTCTGAGGAGAAGAGCACCCAGGTCATTGATTCTGCTGCAACCGGAGGGCTTGGAACGAGCATGATGGGTGGTTCCACACGTGTGGGGTCATGCAGTGGTGTGGCTGCCACGGCTGCACGGGAGGATGGCGCGTTCCTGGCGGAGGTTGCAAAGCGTGGCAAGGTGGCGACAACACGCGTGCCGGCAAACAGCCGTGACCAGAGTGTGAGTGGCAGCGCCACCTTTGGGATGAACAGCCAGCACGTGACACTAGACACATGCGACATGGAGTTTGGTTTGGGTTTTACTTCCACCTCCATAGGGTCTTTGGAAAACACAAAGACCACCACAGTTGATGACCACGATTCTGTTTGCCATAGTAAACCAACGAGAGGGGACGGGGCGGAGGAGAGAAAGAGAGAAAACAGAAAATCTTCAGTGTGCACCAAAAGGAGCAGAGCTGCAGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACACTGCAAAAGTTGGTCCCAAATTCCAGCAAGGCTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATCTGAAGCAATTGCAAGCACAAGTGCAGATGATAAACAGATTCAACATGTCATCCATGATGCTCCCGATGACCATGCAACAACAACTTCAAATGTCGATAATGGGGCCAATGGGCATGGGGATGGGAATGGGTATGGGGATGGGAATGGGAATGGGGATGGATATGAACACCATGAATCGGGCTAACATGCCCGGCATGCCTCCAGTCCTCCACCCTTCTGCCTTCATGCCCATGGCCTCATGGGATGCTGCGACAGCCGCAACCGGCGGTGACCGGCTTCAAGGACCTCCAGCCACCATGATGCCTGACCCTATGTCCACATTTTTCGGATGCCAATCACAGCCCATGAACATGGAAGCCTATAGTAGGCTTGCTGCGATGTATCAACAGCTGCACCAGCCTCCAGCTTCTGGTCCAAAGAATTGA 1449 0.5286 MSQCVPSWDIDDNPPPPRASLRSNSNSTAPDVSMLDYDVAELTWENGQPSMHGLGLPRVPVKSSTTTTNTAPHKEAWEKPRGSGTLESIVNQATTLPQWGKSSFVGGDNIGGVYGNVLVPWLNPHRAAAIAAASASNTMTMDALVPCTNRSEEKSTQVIDSAATGGLGTSMMGGSTRVGSCSGVAATAAREDGAFLAEVAKRGKVATTRVPANSRDQSVSGSATFGMNSQHVTLDTCDMEFGLGFTSTSIGSLENTKTTTVDDHDSVCHSKPTRGDGAEERKRENRKSSVCTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKADKASMLDEVIEYLKQLQAQVQMINRFNMSSMMLPMTMQQQLQMSIMGPMGMGMGMGMGMGMGMGMDMNTMNRANMPGMPPVLHPSAFMPMASWDAATAATGGDRLQGPPATMMPDPMSTFFGCQSQPMNMEAYSRLAAMYQQLHQPPASGPKN* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1965 482 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g1965 482 CDD bHLH_AtPIF_like 296 357 - -
Lja1g1965 482 MobiDBLite consensus disorder prediction 48 81 - -
Lja1g1965 482 MobiDBLite consensus disorder prediction 256 313 - -
Lja1g1965 482 PANTHER TRANSCRIPTION FACTOR UNE10 1 480 - -
Lja1g1965 482 MobiDBLite consensus disorder prediction 299 313 - -
Lja1g1965 482 MobiDBLite consensus disorder prediction 258 291 - -
Lja1g1965 482 Pfam Helix-loop-helix DNA-binding domain 301 346 IPR011598 GO:0046983
Lja1g1965 482 Coils Coil 302 322 - -
Lja1g1965 482 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 358 IPR036638 GO:0046983
Lja1g1965 482 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 345 IPR011598 GO:0046983
Lja1g1965 482 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 480 IPR031066 -
Lja1g1965 482 SMART finulus 302 351 IPR011598 GO:0046983
Lja1g1965 482 Gene3D - 292 356 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1965 Lja-Chr1 22501953 22507676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1965 1 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 47.234 2.31e-98 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g1965 HLH 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1965 - - gmx:100798775 612.838